René's URL Explorer Experiment


Title: GitHub - TalusBio/quantms: Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification. · GitHub

Open Graph Title: GitHub - TalusBio/quantms: Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

X Title: GitHub - TalusBio/quantms: Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Description: Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification. - TalusBio/quantms

Open Graph Description: Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification. - TalusBio/quantms

X Description: Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification. - TalusBio/quantms

Opengraph URL: https://github.com/TalusBio/quantms

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:290676fb-428b-3d0f-a289-2562ec037b3b
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id86BE:790A1:50F34A:6C88DC:6A5802DB
html-safe-nonce7c35506c0720dfc1c95776a6c5b62c314fde670204df6e03f3401f0c3601100b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4NkJFOjc5MEExOjUwRjM0QTo2Qzg4REM6NkE1ODAyREIiLCJ2aXNpdG9yX2lkIjoiNDY5MzUzNDY0NTAzNTcyOTYyNyIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacd713066bc1ddd3992e2986a6a48d957426bc51df2005be9718a1e186e81d7706
hovercard-subject-tagrepository:673993632
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/TalusBio/quantms
twitter:imagehttps://opengraph.githubassets.com/2780a2f2d6a1f35e7f79032383de1229e40bed3a10fe1c7fb16b45aaf510c81d/TalusBio/quantms
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/2780a2f2d6a1f35e7f79032383de1229e40bed3a10fe1c7fb16b45aaf510c81d/TalusBio/quantms
og:image:altQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification. - TalusBio/quantms
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None49c8c15fabcbf356d607a90ca115c13b273e42ff8b74155de050fd229a9b0121
turbo-cache-controlno-cache
go-importgithub.com/TalusBio/quantms git https://github.com/TalusBio/quantms.git
octolytics-dimension-user_id69866862
octolytics-dimension-user_loginTalusBio
octolytics-dimension-repository_id673993632
octolytics-dimension-repository_nwoTalusBio/quantms
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id421926463
octolytics-dimension-repository_parent_nwobigbio/quantms
octolytics-dimension-repository_network_root_id421926463
octolytics-dimension-repository_network_root_nwobigbio/quantms
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3fb1f684e7a833eb1b2d01d39875a2b52cb4fe9b
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/TalusBio/quantms#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FTalusBio%2Fquantms
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FTalusBio%2Fquantms
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=TalusBio%2Fquantms
Reloadhttps://github.com/TalusBio/quantms
Reloadhttps://github.com/TalusBio/quantms
Reloadhttps://github.com/TalusBio/quantms
Please reload this pagehttps://github.com/TalusBio/quantms
TalusBio https://github.com/TalusBio
quantmshttps://github.com/TalusBio/quantms
bigbio/quantmshttps://github.com/bigbio/quantms
Notifications https://github.com/login?return_to=%2FTalusBio%2Fquantms
Fork 0 https://github.com/login?return_to=%2FTalusBio%2Fquantms
Star 0 https://github.com/login?return_to=%2FTalusBio%2Fquantms
Code https://github.com/TalusBio/quantms
Issues 0 https://github.com/TalusBio/quantms/issues
Pull requests 0 https://github.com/TalusBio/quantms/pulls
Actions https://github.com/TalusBio/quantms/actions
Projects https://github.com/TalusBio/quantms/projects
Security and quality 0 https://github.com/TalusBio/quantms/security
Insights https://github.com/TalusBio/quantms/pulse
Code https://github.com/TalusBio/quantms
Issues https://github.com/TalusBio/quantms/issues
Pull requests https://github.com/TalusBio/quantms/pulls
Actions https://github.com/TalusBio/quantms/actions
Projects https://github.com/TalusBio/quantms/projects
Security and quality https://github.com/TalusBio/quantms/security
Insights https://github.com/TalusBio/quantms/pulse
https://github.com/TalusBio/quantms
Brancheshttps://github.com/TalusBio/quantms/branches
Tagshttps://github.com/TalusBio/quantms/tags
https://github.com/TalusBio/quantms/branches
https://github.com/TalusBio/quantms/tags
1,317 Commitshttps://github.com/TalusBio/quantms/commits/master/
https://github.com/TalusBio/quantms/commits/master/
.devcontainerhttps://github.com/TalusBio/quantms/tree/master/.devcontainer
.devcontainerhttps://github.com/TalusBio/quantms/tree/master/.devcontainer
.githubhttps://github.com/TalusBio/quantms/tree/master/.github
.githubhttps://github.com/TalusBio/quantms/tree/master/.github
assetshttps://github.com/TalusBio/quantms/tree/master/assets
assetshttps://github.com/TalusBio/quantms/tree/master/assets
binhttps://github.com/TalusBio/quantms/tree/master/bin
binhttps://github.com/TalusBio/quantms/tree/master/bin
confhttps://github.com/TalusBio/quantms/tree/master/conf
confhttps://github.com/TalusBio/quantms/tree/master/conf
docshttps://github.com/TalusBio/quantms/tree/master/docs
docshttps://github.com/TalusBio/quantms/tree/master/docs
libhttps://github.com/TalusBio/quantms/tree/master/lib
libhttps://github.com/TalusBio/quantms/tree/master/lib
moduleshttps://github.com/TalusBio/quantms/tree/master/modules
moduleshttps://github.com/TalusBio/quantms/tree/master/modules
subworkflows/localhttps://github.com/TalusBio/quantms/tree/master/subworkflows/local
subworkflows/localhttps://github.com/TalusBio/quantms/tree/master/subworkflows/local
workflowshttps://github.com/TalusBio/quantms/tree/master/workflows
workflowshttps://github.com/TalusBio/quantms/tree/master/workflows
.editorconfighttps://github.com/TalusBio/quantms/blob/master/.editorconfig
.editorconfighttps://github.com/TalusBio/quantms/blob/master/.editorconfig
.gitattributeshttps://github.com/TalusBio/quantms/blob/master/.gitattributes
.gitattributeshttps://github.com/TalusBio/quantms/blob/master/.gitattributes
.gitignorehttps://github.com/TalusBio/quantms/blob/master/.gitignore
.gitignorehttps://github.com/TalusBio/quantms/blob/master/.gitignore
.gitpod.ymlhttps://github.com/TalusBio/quantms/blob/master/.gitpod.yml
.gitpod.ymlhttps://github.com/TalusBio/quantms/blob/master/.gitpod.yml
.nf-core.ymlhttps://github.com/TalusBio/quantms/blob/master/.nf-core.yml
.nf-core.ymlhttps://github.com/TalusBio/quantms/blob/master/.nf-core.yml
.pre-commit-config.yamlhttps://github.com/TalusBio/quantms/blob/master/.pre-commit-config.yaml
.pre-commit-config.yamlhttps://github.com/TalusBio/quantms/blob/master/.pre-commit-config.yaml
.prettierignorehttps://github.com/TalusBio/quantms/blob/master/.prettierignore
.prettierignorehttps://github.com/TalusBio/quantms/blob/master/.prettierignore
.prettierrc.ymlhttps://github.com/TalusBio/quantms/blob/master/.prettierrc.yml
.prettierrc.ymlhttps://github.com/TalusBio/quantms/blob/master/.prettierrc.yml
CHANGELOG.mdhttps://github.com/TalusBio/quantms/blob/master/CHANGELOG.md
CHANGELOG.mdhttps://github.com/TalusBio/quantms/blob/master/CHANGELOG.md
CITATIONS.mdhttps://github.com/TalusBio/quantms/blob/master/CITATIONS.md
CITATIONS.mdhttps://github.com/TalusBio/quantms/blob/master/CITATIONS.md
CODE_OF_CONDUCT.mdhttps://github.com/TalusBio/quantms/blob/master/CODE_OF_CONDUCT.md
CODE_OF_CONDUCT.mdhttps://github.com/TalusBio/quantms/blob/master/CODE_OF_CONDUCT.md
LICENSEhttps://github.com/TalusBio/quantms/blob/master/LICENSE
LICENSEhttps://github.com/TalusBio/quantms/blob/master/LICENSE
README.mdhttps://github.com/TalusBio/quantms/blob/master/README.md
README.mdhttps://github.com/TalusBio/quantms/blob/master/README.md
main.nfhttps://github.com/TalusBio/quantms/blob/master/main.nf
main.nfhttps://github.com/TalusBio/quantms/blob/master/main.nf
modules.jsonhttps://github.com/TalusBio/quantms/blob/master/modules.json
modules.jsonhttps://github.com/TalusBio/quantms/blob/master/modules.json
nextflow.confighttps://github.com/TalusBio/quantms/blob/master/nextflow.config
nextflow.confighttps://github.com/TalusBio/quantms/blob/master/nextflow.config
nextflow_schema.jsonhttps://github.com/TalusBio/quantms/blob/master/nextflow_schema.json
nextflow_schema.jsonhttps://github.com/TalusBio/quantms/blob/master/nextflow_schema.json
pyproject.tomlhttps://github.com/TalusBio/quantms/blob/master/pyproject.toml
pyproject.tomlhttps://github.com/TalusBio/quantms/blob/master/pyproject.toml
tower.ymlhttps://github.com/TalusBio/quantms/blob/master/tower.yml
tower.ymlhttps://github.com/TalusBio/quantms/blob/master/tower.yml
READMEhttps://github.com/TalusBio/quantms
Code of conducthttps://github.com/TalusBio/quantms
Contributinghttps://github.com/TalusBio/quantms
Licensehttps://github.com/TalusBio/quantms
https://github.com/TalusBio/quantms/blob/master/docs/images/nf-core-quantms_logo_light.png#gh-light-mode-only
https://github.com/TalusBio/quantms/blob/master/docs/images/nf-core-quantms_logo_dark.png#gh-dark-mode-only
https://github.com/TalusBio/quantms#-
https://nf-co.re/quantms/results
https://doi.org/10.5281/zenodo.7754148
https://www.nextflow.io/
https://docs.conda.io/en/latest/
https://www.docker.com/
https://sylabs.io/docs/
https://tower.nf/launch?pipeline=https://github.com/nf-core/quantms
https://nfcore.slack.com/channels/quantms
https://twitter.com/nf_core
https://mstdn.science/@nf_core
https://www.youtube.com/c/nf-core
https://github.com/TalusBio/quantms#introduction
quantmshttps://quantms.readthedocs.io/en/latest/
https://github.com/TalusBio/quantms/blob/master/docs/images/quantms.png
Nextflowhttps://www.nextflow.io
Nextflow DSL2https://www.nextflow.io/docs/latest/dsl2.html
nf-core/moduleshttps://github.com/nf-core/modules
Nextflowhttps://www.nextflow.io
Nextflow DSL2https://www.nextflow.io/docs/latest/dsl2.html
nf-core/moduleshttps://github.com/nf-core/modules
nf-core websitehttps://nf-co.re/quantms/results
https://github.com/TalusBio/quantms#pipeline-summary
https://github.com/TalusBio/quantms#dda-lfq-data-dependent-label-free-quantification
thermorawfileparserhttps://github.com/compomics/ThermoRawFileParser
comethttps://uwpr.github.io/Comet/
msgf+https://github.com/MSGFPlus/msgfplus
percolatorhttps://github.com/percolator/percolator
openms fdr toolhttps://github.com/nf-core/quantms/blob/dev/modules/local/openms/falsediscoveryrate/main.nf
luciphorhttps://github.com/dfermin/lucXor
proteomicsLFQhttps://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/UTILS_ProteomicsLFQ.html
proteomicsLFQhttps://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/UTILS_ProteomicsLFQ.html
pmultiqchttps://github.com/bigbio/pmultiqc
MSstatshttps://github.com/VitekLab/MSstats
https://github.com/TalusBio/quantms#dda-iso-data-dependent-quantification-via-isobaric-labelling
thermorawfileparserhttps://github.com/compomics/ThermoRawFileParser
comethttps://uwpr.github.io/Comet/
msgf+https://github.com/MSGFPlus/msgfplus
percolatorhttps://github.com/percolator/percolator
openms fdr toolhttps://github.com/nf-core/quantms/blob/dev/modules/local/openms/falsediscoveryrate/main.nf
luciphorhttps://github.com/dfermin/lucXor
IsobaricAnalyzerhttps://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_IsobaricAnalyzer.html
ProteinInferencehttps://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_ProteinInference.html
Epifanyhttps://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/UTILS_Epifany.html
ProteinQuantifierhttps://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_ProteinQuantifier.html
pmultiqchttps://github.com/bigbio/pmultiqc
MSstatshttps://github.com/VitekLab/MSstats
https://github.com/TalusBio/quantms#dia-lfq-data-independent-label-free-quantification
thermorawfileparserhttps://github.com/compomics/ThermoRawFileParser
optional stephttps://github.com/nf-core/quantms/blob/dev/modules/local/tdf2mzml/main.nf
dia-nnhttps://github.com/vdemichev/DiaNN/
pmultiqchttps://github.com/bigbio/pmultiqc
https://github.com/TalusBio/quantms#functionality-overview
https://github.com/TalusBio/quantms/blob/master/docs/images/quantms_metro.png
https://github.com/TalusBio/quantms#usage
this pagehttps://nf-co.re/docs/usage/installation
test your setuphttps://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline
SDRFhttps://github.com/bigbio/proteomics-sample-metadata
herehttps://github.com/bigbio/proteomics-sample-metadata/tree/master/annotated-projects
Uniprothttps://www.uniprot.org/proteomes?query=*
docshttps://nf-co.re/usage/configuration#custom-configuration-files
usage documentationhttps://nf-co.re/quantms/usage
parameter documentationhttps://nf-co.re/quantms/parameters
https://github.com/TalusBio/quantms#additional-documentation-and-tutorial
full documentationhttps://quantms.readthedocs.io/en/latest/
https://github.com/TalusBio/quantms#pipeline-output
resultshttps://nf-co.re/quantms/results
output documentationhttps://nf-co.re/quantms/output
https://github.com/TalusBio/quantms#credits
@daichengxinhttps://github.com/daichengxin
@jpfeufferhttps://github.com/jpfeuffer
@ypriverolhttps://github.com/ypriverol
@timosachsenberghttps://github.com/timosachsenberg
@WangHong007https://github.com/WangHong007
https://github.com/TalusBio/quantms#contributions-and-support
contributing guidelineshttps://github.com/TalusBio/quantms/blob/master/.github/CONTRIBUTING.md
Slack #quantms channelhttps://nfcore.slack.com/channels/quantms
this invitehttps://nf-co.re/join/slack
https://github.com/TalusBio/quantms#citations
10.5281/zenodo.7754148https://doi.org/10.5281/zenodo.7754148
CITATIONS.mdhttps://github.com/TalusBio/quantms/blob/master/CITATIONS.md
10.1038/s41587-020-0439-xhttps://dx.doi.org/10.1038/s41587-020-0439-x
nf-co.re/quantmshttps://nf-co.re/quantms
Readme https://github.com/TalusBio/quantms#readme-ov-file
MIT license https://github.com/TalusBio/quantms#MIT-1-ov-file
Code of conduct https://github.com/TalusBio/quantms#coc-ov-file
Contributing https://github.com/TalusBio/quantms#contributing-ov-file
Please reload this pagehttps://github.com/TalusBio/quantms
Activityhttps://github.com/TalusBio/quantms/activity
Custom propertieshttps://github.com/TalusBio/quantms/custom-properties
0 forkshttps://github.com/TalusBio/quantms/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FTalusBio%2Fquantms&report=TalusBio+%28user%29
Releaseshttps://github.com/TalusBio/quantms/releases
Packages 0https://github.com/orgs/TalusBio/packages?repo_name=quantms
Please reload this pagehttps://github.com/TalusBio/quantms
Contributorshttps://github.com/TalusBio/quantms/graphs/contributors
Please reload this pagehttps://github.com/TalusBio/quantms
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.