René's URL Explorer Experiment

Title: GitHub - Rostlab/ProtTrans: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. · GitHub

Open Graph Title: GitHub - Rostlab/ProtTrans: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

X Title: GitHub - Rostlab/ProtTrans: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Description: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rostlab/ProtTrans

Open Graph Description: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rost...

X Description: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rost...

Mail addresses
assistant@rostlab.org?subject=[GitHub]ProtTrans

Opengraph URL: https://github.com/Rostlab/ProtTrans

X: @github

direct link

Domain: github.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:29932eae-0ae0-b5a0-d4e0-7f3f413a4861
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	DBF2:171F06:96F5C:C279F:6A4C1C14
html-safe-nonce	8a71ad10689940181c0fb8a14ab109f704c0ad72e294c923e5c69d36cde7b616
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEQkYyOjE3MUYwNjo5NkY1QzpDMjc5Rjo2QTRDMUMxNCIsInZpc2l0b3JfaWQiOiIzMzY2MDgwNjg0NzI0MzI5NDkyIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac	24d7b14ea5e44dc0feb3e72d96ffcd19d8c85b631ed62c525ebe4b4ae1038ba3
hovercard-subject-tag	repository:504454718
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/Rostlab/ProtTrans
twitter:image	https://opengraph.githubassets.com/a5155979b32114a88869622df8d0aa16034ac534ea230a3189cb6a21054e01b9/Rostlab/ProtTrans
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/a5155979b32114a88869622df8d0aa16034ac534ea230a3189cb6a21054e01b9/Rostlab/ProtTrans
og:image:alt	ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rost...
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	0ccfc9e5281bfe12e38a4d632dc422843e4d5b6757917f7efda2f6567d72fea9
turbo-cache-control	no-cache
go-import	github.com/Rostlab/ProtTrans git https://github.com/Rostlab/ProtTrans.git
octolytics-dimension-user_id	4093405
octolytics-dimension-user_login	Rostlab
octolytics-dimension-repository_id	504454718
octolytics-dimension-repository_nwo	Rostlab/ProtTrans
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	true
octolytics-dimension-repository_parent_id	263028569
octolytics-dimension-repository_parent_nwo	agemagician/ProtTrans
octolytics-dimension-repository_network_root_id	263028569
octolytics-dimension-repository_network_root_nwo	agemagician/ProtTrans
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	17b2c8bc78100cad23202aad2074e77ead6bd1d6
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://github.com/Rostlab/ProtTrans#start-of-content
	https://github.com/
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FRostlab%2FProtTrans
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub Copilot appDirect agents from issue to merge	https://github.com/features/ai/github-app
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
View all resources	https://github.com/resources
GitHub SponsorsFund open source developers	https://github.com/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/accelerator
GitHub Stars	https://stars.github.com
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FRostlab%2FProtTrans
Sign up	https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=Rostlab%2FProtTrans
Reload	https://github.com/Rostlab/ProtTrans
Reload	https://github.com/Rostlab/ProtTrans
Reload	https://github.com/Rostlab/ProtTrans
Please reload this page	https://github.com/Rostlab/ProtTrans
Rostlab	https://github.com/Rostlab
ProtTrans	https://github.com/Rostlab/ProtTrans
agemagician/ProtTrans	https://github.com/agemagician/ProtTrans
Notifications	https://github.com/login?return_to=%2FRostlab%2FProtTrans
Fork 1	https://github.com/login?return_to=%2FRostlab%2FProtTrans
Star 11	https://github.com/login?return_to=%2FRostlab%2FProtTrans
Code	https://github.com/Rostlab/ProtTrans
Pull requests 0	https://github.com/Rostlab/ProtTrans/pulls
Actions	https://github.com/Rostlab/ProtTrans/actions
Security and quality 0	https://github.com/Rostlab/ProtTrans/security
Insights	https://github.com/Rostlab/ProtTrans/pulse
Code	https://github.com/Rostlab/ProtTrans
Pull requests	https://github.com/Rostlab/ProtTrans/pulls
Actions	https://github.com/Rostlab/ProtTrans/actions
Security and quality	https://github.com/Rostlab/ProtTrans/security
Insights	https://github.com/Rostlab/ProtTrans/pulse
	https://github.com/Rostlab/ProtTrans
Branches	https://github.com/Rostlab/ProtTrans/branches
Tags	https://github.com/Rostlab/ProtTrans/tags
	https://github.com/Rostlab/ProtTrans/branches
	https://github.com/Rostlab/ProtTrans/tags
218 Commits	https://github.com/Rostlab/ProtTrans/commits/master/
	https://github.com/Rostlab/ProtTrans/commits/master/
Benchmark	https://github.com/Rostlab/ProtTrans/tree/master/Benchmark
Benchmark	https://github.com/Rostlab/ProtTrans/tree/master/Benchmark
Embedding	https://github.com/Rostlab/ProtTrans/tree/master/Embedding
Embedding	https://github.com/Rostlab/ProtTrans/tree/master/Embedding
Fine-Tuning	https://github.com/Rostlab/ProtTrans/tree/master/Fine-Tuning
Fine-Tuning	https://github.com/Rostlab/ProtTrans/tree/master/Fine-Tuning
Generate	https://github.com/Rostlab/ProtTrans/tree/master/Generate
Generate	https://github.com/Rostlab/ProtTrans/tree/master/Generate
Prediction	https://github.com/Rostlab/ProtTrans/tree/master/Prediction
Prediction	https://github.com/Rostlab/ProtTrans/tree/master/Prediction
Visualization	https://github.com/Rostlab/ProtTrans/tree/master/Visualization
Visualization	https://github.com/Rostlab/ProtTrans/tree/master/Visualization
images	https://github.com/Rostlab/ProtTrans/tree/master/images
images	https://github.com/Rostlab/ProtTrans/tree/master/images
.gitmodules	https://github.com/Rostlab/ProtTrans/blob/master/.gitmodules
.gitmodules	https://github.com/Rostlab/ProtTrans/blob/master/.gitmodules
LICENSE.md	https://github.com/Rostlab/ProtTrans/blob/master/LICENSE.md
LICENSE.md	https://github.com/Rostlab/ProtTrans/blob/master/LICENSE.md
README.md	https://github.com/Rostlab/ProtTrans/blob/master/README.md
README.md	https://github.com/Rostlab/ProtTrans/blob/master/README.md
README	https://github.com/Rostlab/ProtTrans
License	https://github.com/Rostlab/ProtTrans
	https://github.com/Rostlab/ProtTrans#prottrans
ProtTrans	https://github.com/agemagician/ProtTrans/
ProtTrans: cracking the language of life’s code through self-supervised deep learning and high performance computing	https://doi.org/10.1109/TPAMI.2021.3095381
	https://github.com/agemagician/ProtTrans/raw/master/images/transformers_attention.png
Accelerate SARS-CoV-2 research with transfer learning using pre-trained language modeling models	https://covid19-hpc-consortium.org/projects/5ed56e51a21132007ebf57bf
	https://github.com/Rostlab/ProtTrans#table-of-contents
⌛️ Models Availability	https://github.com/Rostlab/ProtTrans#models
⌛️ Dataset Availability	https://github.com/Rostlab/ProtTrans#datasets
🚀 Usage	https://github.com/Rostlab/ProtTrans#usage
🧬 Feature Extraction (FE)	https://github.com/Rostlab/ProtTrans#feature-extraction
💥 Fine Tuning (FT)	https://github.com/Rostlab/ProtTrans#fine-tuning
🧠 Prediction	https://github.com/Rostlab/ProtTrans#prediction
⚗️ Protein Sequences Generation	https://github.com/Rostlab/ProtTrans#protein-generation
🧐 Visualization	https://github.com/Rostlab/ProtTrans#visualization
📈 Benchmark	https://github.com/Rostlab/ProtTrans#benchmark
📊 Original downstream Predictions	https://github.com/Rostlab/ProtTrans#results
📊 Followup use-cases	https://github.com/Rostlab/ProtTrans#inaction
📊 Comparisons to other tools	https://github.com/Rostlab/ProtTrans#comparison
❤️ Community and Contributions	https://github.com/Rostlab/ProtTrans#community
📫 Have a question?	https://github.com/Rostlab/ProtTrans#question
🤝 Found a bug?	https://github.com/Rostlab/ProtTrans#bug
✅ Requirements	https://github.com/Rostlab/ProtTrans#requirements
🤵 Team	https://github.com/Rostlab/ProtTrans#team
💰 Sponsors	https://github.com/Rostlab/ProtTrans#sponsors
📘 License	https://github.com/Rostlab/ProtTrans#license
✏️ Citation	https://github.com/Rostlab/ProtTrans#citation
	https://github.com/Rostlab/ProtTrans#️-models-availability
Download	https://huggingface.co/Rostlab/prot_t5_xl_uniref50/tree/main
Download	https://zenodo.org/record/4644188
Colab	https://colab.research.google.com/drive/1TUj-ayG3WO52n5N50S7KH9vtt6zRkdmj?usp=sharing
Download	https://huggingface.co/Rostlab/prot_t5_xl_bfd/tree/main
Download	https://zenodo.org/record/4633924
Download	https://huggingface.co/Rostlab/prot_t5_xxl_uniref50/tree/main
Download	https://zenodo.org/record/4652717
Download	https://huggingface.co/Rostlab/prot_t5_xxl_bfd/tree/main
Download	https://zenodo.org/record/4635302
Download	https://huggingface.co/Rostlab/prot_bert_bfd/tree/main
Download	https://zenodo.org/record/4633647
Download	https://huggingface.co/Rostlab/prot_bert/tree/main
Download	https://zenodo.org/record/4633691
Download	https://huggingface.co/Rostlab/prot_albert/tree/main
Download	https://zenodo.org/record/4633687
Download	https://huggingface.co/Rostlab/prot_xlnet/tree/main
Download	https://zenodo.org/record/4633987
Download	https://huggingface.co/Rostlab/prot_electra_generator_bfd/tree/main
Download	https://zenodo.org/record/4633813
Download	https://huggingface.co/Rostlab/prot_electra_discriminator_bfd/tree/main
Download	https://zenodo.org/record/4633717
	https://github.com/Rostlab/ProtTrans#️-datasets-availability
Download	https://www.dropbox.com/s/g49lb352ij4cnt7/NEW364.csv?dl=1
Download	https://www.dropbox.com/s/98hovta9qjmmiby/Train_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/te0vn0t7ocdkra7/CASP12_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/9mat2fqqkcvdr67/CB513_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/68pknljl9la8ax3/TS115_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/vgdqcl4vzqm9as0/deeploc_per_protein_train.csv?dl=1
Download	https://www.dropbox.com/s/jfzuokrym7nflkp/deeploc_per_protein_test.csv?dl=1
	https://github.com/Rostlab/ProtTrans#-usage
Embedding Section	https://github.com/agemagician/ProtTrans/tree/master/Embedding
Colab	https://colab.research.google.com/drive/1TUj-ayG3WO52n5N50S7KH9vtt6zRkdmj?usp=sharing
Fine Tuning Section	https://github.com/agemagician/ProtTrans/tree/master/Fine-Tuning
Prediction Section	https://github.com/agemagician/ProtTrans/tree/master/Prediction
Colab	https://colab.research.google.com/drive/1TUj-ayG3WO52n5N50S7KH9vtt6zRkdmj?usp=sharing
Colab	https://colab.research.google.com/drive/1W5fI20eKLtHpaeeGDcKuXsgeiwujeczX?usp=sharing
Generate Section	https://github.com/agemagician/ProtTrans/tree/master/Generate
Visualization Section	https://github.com/agemagician/ProtTrans/tree/master/Visualization
Benchmark Section	https://github.com/agemagician/ProtTrans/tree/master/Benchmark
	https://github.com/Rostlab/ProtTrans#-original-downstream-predictions
predictprotein.org	https://predictprotein.org
predictprotein.org	https://predictprotein.org
	https://github.com/Rostlab/ProtTrans#-use-cases
Light attention predicts protein location from the language of life	https://doi.org/10.1093/bioadv/vbab035
Web-server	https://embed.protein.properties/
Protein embeddings and deep learning predict binding residues for various ligand classes	https://www.nature.com/articles/s41598-021-03431-4
Embeddings from protein language models predict conservation and variant effects	https://rdcu.be/cD7q5
Contrastive learning on protein embeddings enlightens midnight zone at lightning speed	https://www.biorxiv.org/content/10.1101/2021.11.14.468528v2
Protein language model embeddings for fast, accurate, alignment-free protein structure prediction	https://www.biorxiv.org/content/10.1101/2021.07.31.454572v1.abstract
	https://github.com/Rostlab/ProtTrans#-comparison-to-other-protein-language-models-plms
use-cases	https://github.com/Rostlab/ProtTrans#inaction
ESM	https://github.com/facebookresearch/esm
Light-attention	https://academic.oup.com/view-large/figure/321379865/vbab035f2.tif
Light-attention	https://academic.oup.com/view-large/figure/321379865/vbab035f2.tif
ConsEmb	https://rdcu.be/cD7q5
VESPA	https://rdcu.be/cD7q5
VESPA	https://rdcu.be/cD7q5
ProtTucker	https://www.biorxiv.org/content/10.1101/2021.11.14.468528v1
ProtTucker	https://www.biorxiv.org/content/10.1101/2021.11.14.468528v1
bindEmbed21	https://www.nature.com/articles/s41598-021-03431-4
here	https://github.com/agemagician/ProtTrans/blob/master/Embedding/PyTorch/Advanced/ProtT5-XL-UniRef50.ipynb
	https://github.com/Rostlab/ProtTrans#️-community-and-contributions
	https://github.com/Rostlab/ProtTrans#-have-a-question
ProtTrans	https://github.com/agemagician/ProtTrans/issues
	https://github.com/Rostlab/ProtTrans#-found-a-bug
ProtTrans	https://github.com/agemagician/ProtTrans/issues
	https://github.com/Rostlab/ProtTrans#-requirements
Pytorch	https://github.com/pytorch/pytorch
Transformers	https://github.com/huggingface/transformers
BertViz	https://github.com/jessevig/bertviz
	https://github.com/Rostlab/ProtTrans#-team
	https://github.com/agemagician/ProtTrans/blob/master/images/ElnaggarAhmend.jpg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/MichaelHeinzinger-2.jpg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/christiandallago.png?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/female.png?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/B.Rost.jpg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/yu-wang.jpeg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/Llion-Jones.jpg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/Tom-Gibbs.png?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/Tamas-Feher.jpeg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/Christoph-Angerer.jpg?raw=true
	https://github.com/agemagician/ProtTrans/raw/master/images/Martin-Steinegger.png
	https://github.com/agemagician/ProtTrans/blob/master/images/Debsindhu-Bhowmik.jpg?raw=true
	https://github.com/Rostlab/ProtTrans#-sponsors
	https://github.com/agemagician/ProtTrans/blob/master/images/1200px-Nvidia_image_logo.svg.png?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/google-cloud-logo.jpg?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/tfrc.png?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/Oak_Ridge_National_Laboratory_logo.svg.png?raw=true
	https://github.com/agemagician/ProtTrans/blob/master/images/SOFTWARE_CAMPUS_logo_cmyk.jpg?raw=true
	https://github.com/Rostlab/ProtTrans#-license
Academic Free License v3.0 License	https://choosealicense.com/licenses/afl-3.0/
	https://github.com/Rostlab/ProtTrans#️-citation
Readme	https://github.com/Rostlab/ProtTrans#readme-ov-file
AFL-3.0 license	https://github.com/Rostlab/ProtTrans#AFL-3.0-1-ov-file
Please reload this page	https://github.com/Rostlab/ProtTrans
Activity	https://github.com/Rostlab/ProtTrans/activity
Custom properties	https://github.com/Rostlab/ProtTrans/custom-properties
1 fork	https://github.com/Rostlab/ProtTrans/forks
Report repository	https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FRostlab%2FProtTrans&report=Rostlab+%28user%29
Releases	https://github.com/Rostlab/ProtTrans/releases
1 tags	https://github.com/Rostlab/ProtTrans/tags
Packages 0	https://github.com/orgs/Rostlab/packages?repo_name=ProtTrans
Please reload this page	https://github.com/Rostlab/ProtTrans
Contributors	https://github.com/Rostlab/ProtTrans/graphs/contributors
Please reload this page	https://github.com/Rostlab/ProtTrans
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.