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Title: Added Bayes benchmark script by alexhroom · Pull Request #105 · RascalSoftware/python-RAT · GitHub

Open Graph Title: Added Bayes benchmark script by alexhroom · Pull Request #105 · RascalSoftware/python-RAT

X Title: Added Bayes benchmark script by alexhroom · Pull Request #105 · RascalSoftware/python-RAT

Description: This PR fixes part of #92 by adding the Bayes benchmark script, which calculates the posterior distributions for a two- and three-dimensional example 'from scratch' and compares them to the distributions generated by the nested sampler and DREAM. The Python script is mostly similar in workflow to the MATLAB one, but the direct calculation of the posterior is vectorised and the module/function docstrings go into a little more detail on what is actually being done, for users who may not be familiar with the basics of Bayesian reflectivity analysis. This PR also fixes a minor issue with the plotting library - the axes on the contour plots were the wrong way around (but then were flipped to be correct on corner plots)!

Open Graph Description: This PR fixes part of #92 by adding the Bayes benchmark script, which calculates the posterior distributions for a two- and three-dimensional example 'from scratch' and compares them to the...

X Description: This PR fixes part of #92 by adding the Bayes benchmark script, which calculates the posterior distributions for a two- and three-dimensional example 'from scratch' and compares the...

Opengraph URL: https://github.com/RascalSoftware/python-RAT/pull/105

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dacee0b added bayes benchmark script alexhroom Dec 13, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/dacee0ba0389f1bc9d6bb624639b2bb415523a94
fedd7a6 better direct calculation histograms alexhroom Dec 13, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/fedd7a67ad38eb24f2957ca6950213959b7470c7
ae0f495 fixed scalefactor in 3d tests, added DREAM, and made histograms prettier alexhroom Dec 13, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/ae0f4953f1a94c86c1b01180fb7d288280c980cd
1b5471e fixed axes alexhroom Dec 13, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/1b5471ec7e076fa167d8f1a2ca22eb58a31d8517
ba65aec script uses new project and added jupyter notebook alexhroom Dec 16, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/ba65aecebbb3f519619402632043c9ba1992d1f5
afe03f5 fixed dimensions and added notebook alexhroom Dec 16, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/afe03f50dbc17bad5b33641218545e1a31a4de12
c1682be added contours to notebook alexhroom Dec 17, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/c1682be9790e5acbbf8b21feafa6a444595ecbd8
0454def minor fixes to plotting alexhroom Dec 17, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/0454defd7466fc36d6b6f656f12e985e7fc977ba
34c1b1f review fixes alexhroom Dec 19, 2024 https://github.com/RascalSoftware/python-RAT/pull/105/commits/34c1b1f17b5740eca245daa04fabb2fc02e02d23
fa0f5c5 review fixes alexhroom Jan 14, 2025 https://github.com/RascalSoftware/python-RAT/pull/105/commits/fa0f5c56ccf04fb6579d8ba4ed35c466b53f68a6
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