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Title: GitHub - Project-MONAI/tutorials: MONAI Tutorials

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Description: MONAI Tutorials. Contribute to Project-MONAI/tutorials development by creating an account on GitHub.

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matplotlibhttps://matplotlib.org/
Jupyter Notebookhttps://jupyter.org/
installation guidehttps://docs.monai.io/en/latest/installation.html
https://github.com/Project-MONAI/tutorials.git#run-the-notebooks-from-colab
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https://download.pytorch.org/whl/cu124https://download.pytorch.org/whl/cu124
https://github.com/Project-MONAI/tutorials.git#install-monai-and-common-dependencies
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Discussions tabhttps://github.com/Project-MONAI/MONAI/discussions
main repositoryhttps://github.com/Project-MONAI/MONAI/issues
this repositoryhttps://github.com/Project-MONAI/Tutorials/issues
https://github.com/Project-MONAI/tutorials.git#3-become-a-contributor
CONTRIBUTING GUIDELINEShttps://github.com/Project-MONAI/tutorials/blob/main/CONTRIBUTING.md
https://github.com/Project-MONAI/tutorials.git#4-list-of-notebooks-and-examples
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mednist_tutorialhttps://github.com/Project-MONAI/tutorials/blob/main/2d_classification/mednist_tutorial.ipynb
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IXI datasethttps://brain-development.org/ixi-dataset
torch exampleshttps://github.com/Project-MONAI/tutorials/blob/main/3d_classification/torch
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MSD Brain Tumor datasethttp://medicaldecathlon.com
spleen_segmentation_3d_aimhttps://github.com/Project-MONAI/tutorials/blob/main/3d_segmentation/spleen_segmentation_3d_visualization_basic.ipynb
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MSD Spleen datasethttp://medicaldecathlon.com
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https://github.com/Project-MONAI/tutorials.git#covid-19-20-challenge-baseline
COVID-19 LUNG CT LESION SEGMENTATION CHALLENGE - 2020https://covid-segmentation.grand-challenge.org/COVID-19-20/
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https://github.com/Project-MONAI/tutorials.git#unetr_btcv_segmentation_3d
unetr_btcv_segmentation_3d_lightninghttps://github.com/Project-MONAI/tutorials/blob/main/3d_segmentation/unetr_btcv_segmentation_3d_lightning.ipynb
https://github.com/Project-MONAI/tutorials.git#unetr_btcv_segmentation_3d_lightning
PyTorch Lightninghttps://www.pytorchlightning.ai/
vista3dhttps://github.com/Project-MONAI/tutorials/blob/main/3d_segmentation/vista3d
https://github.com/Project-MONAI/tutorials.git#vista3d
MSD Spleen datasethttp://medicaldecathlon.com
VISTAhttps://github.com/Project-MONAI/VISTA
https://github.com/Project-MONAI/tutorials.git#2d-registration
registration using mednisthttps://github.com/Project-MONAI/tutorials/blob/main/2d_registration/registration_mednist.ipynb
https://github.com/Project-MONAI/tutorials.git#registration-using-mednist
https://github.com/Project-MONAI/tutorials.git#3d-registration
3D registration using paired lung CThttps://github.com/Project-MONAI/tutorials/blob/main/3d_registration/paired_lung_ct.ipynb
https://github.com/Project-MONAI/tutorials.git#3d-registration-using-paired-lung-ct
3D registration using unpaired brain MRhttps://github.com/Project-MONAI/tutorials/blob/main/3d_registration/learn2reg_oasis_unpaired_brain_mr.ipynb
https://github.com/Project-MONAI/tutorials.git#3d-registration-using-unpaired-brain-mr
DeepAtlashttps://github.com/Project-MONAI/tutorials/blob/main/deep_atlas/deep_atlas_tutorial.ipynb
https://github.com/Project-MONAI/tutorials.git#deepatlas
https://github.com/Project-MONAI/tutorials.git#deepgrow
Deepgrowhttps://github.com/Project-MONAI/tutorials/blob/main/deepgrow
https://github.com/Project-MONAI/tutorials.git#deepgrow-1
https://github.com/Project-MONAI/tutorials.git#deepedit
DeepEdithttps://github.com/Project-MONAI/tutorials/blob/main/deepedit/ignite
https://github.com/Project-MONAI/tutorials.git#deepedit-1
https://github.com/Project-MONAI/tutorials.git#deployment
BentoMLhttps://github.com/Project-MONAI/tutorials/blob/main/deployment/bentoml
https://github.com/Project-MONAI/tutorials.git#bentoml
BentoMLhttps://www.bentoml.ai/
Rayhttps://github.com/Project-MONAI/tutorials/blob/main/deployment/ray
https://github.com/Project-MONAI/tutorials.git#ray
Rayhttps://docs.ray.io/en/master/serve/index.html#rayserve
Tritonhttps://github.com/Project-MONAI/tutorials/blob/main/deployment/Triton
https://github.com/Project-MONAI/tutorials.git#triton
See Triton Inference Server/python_backend documentationhttps://github.com/triton-inference-server/python_backend#usage
https://github.com/Project-MONAI/tutorials.git#experiment-management
Aimhttps://github.com/Project-MONAI/tutorials/blob/main/experiment_management/spleen_segmentation_aim.ipynb
https://github.com/Project-MONAI/tutorials.git#aim
Aimhttps://aimstack.io/aim-monai-tutorial/
MLFlowhttps://github.com/Project-MONAI/tutorials/blob/main/experiment_management/spleen_segmentation_mlflow.ipynb
https://github.com/Project-MONAI/tutorials.git#mlflow
MLFlowhttps://www.mlflow.org/docs/latest/tracking.html
MONAI bundle integrates MLFlowhttps://github.com/Project-MONAI/tutorials/blob/main/experiment_management/bundle_integrate_mlflow.ipynb
https://github.com/Project-MONAI/tutorials.git#monai-bundle-integrates-mlflow
ClearMLhttps://github.com/Project-MONAI/tutorials/blob/main/experiment_management/unet_segmentation_3d_ignite_clearml.ipynb
https://github.com/Project-MONAI/tutorials.git#clearml
ClearMLhttps://clear.ml/docs/latest/docs/
https://github.com/Project-MONAI/tutorials.git#federated-learning
NVFlarehttps://github.com/Project-MONAI/tutorials/blob/main/federated_learning/nvflare
https://github.com/Project-MONAI/tutorials.git#nvflare
NVFlarehttps://pypi.org/project/nvflare/
OpenFLhttps://github.com/Project-MONAI/tutorials/blob/main/federated_learning/openfl
https://github.com/Project-MONAI/tutorials.git#openfl
OpenFLhttps://github.com/intel/openfl
Substrahttps://github.com/Project-MONAI/tutorials/blob/main/federated_learning/substra
https://github.com/Project-MONAI/tutorials.git#substra
Breast Density FL Challengehttps://github.com/Project-MONAI/tutorials/blob/main/federated_learning/breast_density_challenge
https://github.com/Project-MONAI/tutorials.git#breast-density-fl-challenge
ACR-NVIDIA-NCI Breast Density FL challengehttp://breastdensityfl.acr.org
https://github.com/Project-MONAI/tutorials.git#digital-pathology
Whole Slide Tumor Detectionhttps://github.com/Project-MONAI/tutorials/blob/main/pathology/tumor_detection
https://github.com/Project-MONAI/tutorials.git#whole-slide-tumor-detection
Profiling Whole Slide Tumor Detectionhttps://github.com/Project-MONAI/tutorials/blob/main/pathology/tumor_detection
https://github.com/Project-MONAI/tutorials.git#profiling-whole-slide-tumor-detection
Multiple Instance Learning WSI classificationhttps://github.com/Project-MONAI/tutorials/blob/main/pathology/multiple_instance_learning
https://github.com/Project-MONAI/tutorials.git#multiple-instance-learning-wsi-classification
NuClick Annotationhttps://github.com/Project-MONAI/tutorials/blob/main/pathology/nuclick#nuclick-interaction-model
https://github.com/Project-MONAI/tutorials.git#nuclick-annotation
HoVerNet:Nuclear segmentation and classification taskhttps://github.com/Project-MONAI/tutorials/blob/main/pathology/hovernet
https://github.com/Project-MONAI/tutorials.git#hovernetnuclear-segmentation-and-classification-task
HoVerNethttps://www.sciencedirect.com/science/article/abs/pii/S1361841519301045
Nuclei Classificationhttps://github.com/Project-MONAI/tutorials/blob/main/pathology/nuclick#nuclei-classification-model
https://github.com/Project-MONAI/tutorials.git#nuclei-classification
https://github.com/Project-MONAI/tutorials.git#acceleration
fast_model_training_guidehttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/fast_model_training_guide.md
https://github.com/Project-MONAI/tutorials.git#fast_model_training_guide
distributed_traininghttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/distributed_training
https://github.com/Project-MONAI/tutorials.git#distributed_training
automatic_mixed_precisionhttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/automatic_mixed_precision.ipynb
https://github.com/Project-MONAI/tutorials.git#automatic_mixed_precision
dataset_type_performancehttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/dataset_type_performance.ipynb
https://github.com/Project-MONAI/tutorials.git#dataset_type_performance
fast_training_tutorialhttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/fast_training_tutorial.ipynb
https://github.com/Project-MONAI/tutorials.git#fast_training_tutorial
threadbuffer_performancehttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/threadbuffer_performance.ipynb
https://github.com/Project-MONAI/tutorials.git#threadbuffer_performance
transform_speedhttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/transform_speed.ipynb
https://github.com/Project-MONAI/tutorials.git#transform_speed
TensorRT_inference_accelerationhttps://github.com/Project-MONAI/tutorials/blob/main/acceleration/TensorRT_inference_acceleration.ipynb
https://github.com/Project-MONAI/tutorials.git#tensorrt_inference_acceleration
https://github.com/Project-MONAI/tutorials.git#model-zoo
easy_integrate_bundlehttps://github.com/Project-MONAI/tutorials/blob/main/model_zoo/app_integrate_bundle
https://github.com/Project-MONAI/tutorials.git#easy_integrate_bundle
https://github.com/Project-MONAI/tutorials.git#computer-assisted-intervention
video segmentationhttps://github.com/Project-MONAI/tutorials/blob/main/computer_assisted_intervention/video_seg.ipynb
https://github.com/Project-MONAI/tutorials.git#video-segmentation
endoscopic inbody classificationhttps://github.com/Project-MONAI/tutorials/blob/main/computer_assisted_intervention/endoscopic_inbody_classification.ipynb
https://github.com/Project-MONAI/tutorials.git#endoscopic-inbody-classification
https://github.com/Project-MONAI/tutorials.git#hugging-face
MONAI Hugging Face Pipelinehttps://github.com/Project-MONAI/tutorials/blob/main/hugging_face/hugging_face_pipeline_for_monai.ipynb
https://github.com/Project-MONAI/tutorials.git#monai-hugging-face-pipeline
Fine-tuning for Hugging Face Pipelinehttps://github.com/Project-MONAI/tutorials/blob/main/hugging_face/finetune_vista3d_for_hugging_face_pipeline.ipynb
https://github.com/Project-MONAI/tutorials.git#fine-tuning-for-hugging-face-pipeline
https://github.com/Project-MONAI/tutorials.git#modules
bundlehttps://github.com/Project-MONAI/tutorials/blob/main/bundle
https://github.com/Project-MONAI/tutorials.git#bundle
competitionshttps://github.com/Project-MONAI/tutorials/blob/main/competitions
https://github.com/Project-MONAI/tutorials.git#competitions
engineshttps://github.com/Project-MONAI/tutorials/blob/main/modules/engines
https://github.com/Project-MONAI/tutorials.git#engines
3d_image_transformshttps://github.com/Project-MONAI/tutorials/blob/main/modules/3d_image_transforms.ipynb
https://github.com/Project-MONAI/tutorials.git#3d_image_transforms
2d_inference_3d_volumehttps://github.com/Project-MONAI/tutorials/blob/main/modules/2d_inference_3d_volume.ipynb
https://github.com/Project-MONAI/tutorials.git#2d_inference_3d_volume
autoencoder_mednisthttps://github.com/Project-MONAI/tutorials/blob/main/modules/autoencoder_mednist.ipynb
https://github.com/Project-MONAI/tutorials.git#autoencoder_mednist
batch_output_transformhttps://github.com/Project-MONAI/tutorials/blob/main/modules/batch_output_transform.ipynb
https://github.com/Project-MONAI/tutorials.git#batch_output_transform
bending_energy_diffusion_loss_noteshttps://github.com/Project-MONAI/tutorials/blob/main/modules/bending_energy_diffusion_loss_notes.ipynb
https://github.com/Project-MONAI/tutorials.git#bending_energy_diffusion_loss_notes
compute_metrichttps://github.com/Project-MONAI/tutorials/blob/main/modules/compute_metric.py
https://github.com/Project-MONAI/tutorials.git#compute_metric
csv_datasetshttps://github.com/Project-MONAI/tutorials/blob/main/modules/csv_datasets.ipynb
https://github.com/Project-MONAI/tutorials.git#csv_datasets
decollate_batchhttps://github.com/Project-MONAI/tutorials/blob/main/modules/decollate_batch.ipynb
https://github.com/Project-MONAI/tutorials.git#decollate_batch
image_datasethttps://github.com/Project-MONAI/tutorials/blob/main/modules/image_dataset.ipynb
https://github.com/Project-MONAI/tutorials.git#image_dataset
dynunet_tutorialhttps://github.com/Project-MONAI/tutorials/blob/main/modules/dynunet_pipeline
https://github.com/Project-MONAI/tutorials.git#dynunet_tutorial
integrate_3rd_party_transformshttps://github.com/Project-MONAI/tutorials/blob/main/modules/integrate_3rd_party_transforms.ipynb
https://github.com/Project-MONAI/tutorials.git#integrate_3rd_party_transforms
inverse transformations and test-time augmentationshttps://github.com/Project-MONAI/tutorials/blob/main/modules/inverse_transforms_and_test_time_augmentations.ipynb
https://github.com/Project-MONAI/tutorials.git#inverse-transformations-and-test-time-augmentations
layer wise learning ratehttps://github.com/Project-MONAI/tutorials/blob/main/modules/layer_wise_learning_rate.ipynb
https://github.com/Project-MONAI/tutorials.git#layer-wise-learning-rate
learning rate finderhttps://github.com/Project-MONAI/tutorials/blob/main/modules/learning_rate.ipynb
https://github.com/Project-MONAI/tutorials.git#learning-rate-finder
load_medical_imageshttps://github.com/Project-MONAI/tutorials/blob/main/modules/load_medical_images.ipynb
https://github.com/Project-MONAI/tutorials.git#load_medical_images
mednist_GAN_tutorialhttps://github.com/Project-MONAI/tutorials/blob/main/modules/mednist_GAN_tutorial.ipynb
https://github.com/Project-MONAI/tutorials.git#mednist_gan_tutorial
mednist_GAN_workflow_dicthttps://github.com/Project-MONAI/tutorials/blob/main/modules/mednist_GAN_workflow_dict.ipynb
https://github.com/Project-MONAI/tutorials.git#mednist_gan_workflow_dict
mednist_GAN_workflow_arrayhttps://github.com/Project-MONAI/tutorials/blob/main/modules/mednist_GAN_workflow_array.ipynb
https://github.com/Project-MONAI/tutorials.git#mednist_gan_workflow_array
cross_validation_models_ensemblehttps://github.com/Project-MONAI/tutorials/blob/main/modules/cross_validation_models_ensemble.ipynb
https://github.com/Project-MONAI/tutorials.git#cross_validation_models_ensemble
nifti_read_examplehttps://github.com/Project-MONAI/tutorials/blob/main/modules/nifti_read_example.ipynb
https://github.com/Project-MONAI/tutorials.git#nifti_read_example
network_apihttps://github.com/Project-MONAI/tutorials/blob/main/modules/network_api.ipynb
https://github.com/Project-MONAI/tutorials.git#network_api
postprocessing_transformshttps://github.com/Project-MONAI/tutorials/blob/main/modules/postprocessing_transforms.ipynb
https://github.com/Project-MONAI/tutorials.git#postprocessing_transforms
public_datasetshttps://github.com/Project-MONAI/tutorials/blob/main/modules/public_datasets.ipynb
https://github.com/Project-MONAI/tutorials.git#public_datasets
tcia_csv_processinghttps://github.com/Project-MONAI/tutorials/blob/main/modules/tcia_csv_processing.ipynb
https://github.com/Project-MONAI/tutorials.git#tcia_csv_processing
transforms_demo_2dhttps://github.com/Project-MONAI/tutorials/blob/main/modules/transforms_demo_2d.ipynb
https://github.com/Project-MONAI/tutorials.git#transforms_demo_2d
UNet_input_size_constraintshttps://github.com/Project-MONAI/tutorials/blob/main/modules/UNet_input_size_constraints.ipynb
https://github.com/Project-MONAI/tutorials.git#unet_input_size_constraints
TorchIO, MONAI, PyTorch Lightninghttps://github.com/Project-MONAI/tutorials/blob/main/modules/TorchIO_MONAI_PyTorch_Lightning.ipynb
https://github.com/Project-MONAI/tutorials.git#torchio-monai-pytorch-lightning
varautoencoder_mednisthttps://github.com/Project-MONAI/tutorials/blob/main/modules/varautoencoder_mednist.ipynb
https://github.com/Project-MONAI/tutorials.git#varautoencoder_mednist
interpretabilityhttps://github.com/Project-MONAI/tutorials/blob/main/modules/interpretability
https://github.com/Project-MONAI/tutorials.git#interpretability
Transform visualizationhttps://github.com/Project-MONAI/tutorials/blob/main/modules/transform_visualization.ipynb
https://github.com/Project-MONAI/tutorials.git#transform-visualization
Auto3DSeghttps://github.com/Project-MONAI/tutorials/blob/main/auto3dseg
https://github.com/Project-MONAI/tutorials.git#auto3dseg
https://github.com/Project-MONAI/tutorials.git#self-supervised-learning
self_supervised_pretraininghttps://github.com/Project-MONAI/tutorials/blob/main/self_supervised_pretraining/vit_unetr_ssl/ssl_train.ipynb
https://github.com/Project-MONAI/tutorials.git#self_supervised_pretraining
self_supervised_pretraining_based_finetuninghttps://github.com/Project-MONAI/tutorials/blob/main/self_supervised_pretraining/vit_unetr_ssl/ssl_finetune.ipynb
https://github.com/Project-MONAI/tutorials.git#self_supervised_pretraining_based_finetuning
Generative Modelhttps://github.com/Project-MONAI/tutorials/blob/main/generation
https://github.com/Project-MONAI/tutorials.git#generative-model
3D latent diffusion modelhttps://github.com/Project-MONAI/tutorials/blob/main/generation/3d_ldm
https://github.com/Project-MONAI/tutorials.git#3d-latent-diffusion-model
2D latent diffusion modelhttps://github.com/Project-MONAI/tutorials/blob/main/generation/2d_ldm
https://github.com/Project-MONAI/tutorials.git#2d-latent-diffusion-model
Brats 3D latent diffusion modelhttps://github.com/Project-MONAI/tutorials/blob/main/generation/3d_ldm/README.md
https://github.com/Project-MONAI/tutorials.git#brats-3d-latent-diffusion-model
MAISI 3D latent diffusion modelhttps://github.com/Project-MONAI/tutorials/blob/main/generation/maisi/README.md
https://github.com/Project-MONAI/tutorials.git#maisi-3d-latent-diffusion-model
SPADE in VAE-GAN for Semantic Image Synthesis on 2D BraTS Datahttps://github.com/Project-MONAI/tutorials/blob/main/generation/spade_gan
https://github.com/Project-MONAI/tutorials.git#spade-in-vae-gan-for-semantic-image-synthesis-on-2d-brats-data
Applying Latent Diffusion Models to 2D BraTS Data for Semantic Image Synthesishttps://github.com/Project-MONAI/tutorials/blob/main/generation/spade_ldm
https://github.com/Project-MONAI/tutorials.git#applying-latent-diffusion-models-to-2d-brats-data-for-semantic-image-synthesis
Diffusion Models for Implicit Image Segmentation Ensembleshttps://github.com/Project-MONAI/tutorials/blob/main/generation/image_to_image_translation
https://github.com/Project-MONAI/tutorials.git#diffusion-models-for-implicit-image-segmentation-ensembles
Evaluate Realism and Diversity of the generated imageshttps://github.com/Project-MONAI/tutorials/blob/main/generation/realism_diversity_metrics
https://github.com/Project-MONAI/tutorials.git#evaluate-realism-and-diversity-of-the-generated-images
VISTA2Dhttps://github.com/Project-MONAI/tutorials/blob/main/vista_2d
https://github.com/Project-MONAI/tutorials.git#vista2d
MONAIhttps://monai.io/
Segment Anything Model (SAM)https://github.com/facebookresearch/segment-anything
Cellpose datasethttps://www.cellpose.org/
jupyter-notebook https://github.com/topics/jupyter-notebook
pytorch https://github.com/topics/pytorch
monai https://github.com/topics/monai
monai-tutorials https://github.com/topics/monai-tutorials
monai-workflows https://github.com/topics/monai-workflows
Readme https://github.com/Project-MONAI/tutorials.git#readme-ov-file
Apache-2.0 license https://github.com/Project-MONAI/tutorials.git#Apache-2.0-1-ov-file
Contributing https://github.com/Project-MONAI/tutorials.git#contributing-ov-file
Please reload this pagehttps://github.com/Project-MONAI/tutorials.git
Activityhttps://github.com/Project-MONAI/tutorials/activity
Custom propertieshttps://github.com/Project-MONAI/tutorials/custom-properties
2.4k starshttps://github.com/Project-MONAI/tutorials/stargazers
35 watchinghttps://github.com/Project-MONAI/tutorials/watchers
779 forkshttps://github.com/Project-MONAI/tutorials/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FProject-MONAI%2Ftutorials&report=Project-MONAI+%28user%29
Releaseshttps://github.com/Project-MONAI/tutorials/releases
13 tags https://github.com/Project-MONAI/tutorials/tags
Contributors 93https://github.com/Project-MONAI/tutorials/graphs/contributors
https://github.com/Nic-Ma
https://github.com/apps/pre-commit-ci
https://github.com/wyli
https://github.com/KumoLiu
https://github.com/yiheng-wang-nv
https://github.com/mingxin-zheng
https://github.com/ericspod
https://github.com/rijobro
https://github.com/Can-Zhao
https://github.com/dongyang0122
https://github.com/bhashemian
https://github.com/finalelement
https://github.com/binliunls
https://github.com/monai-bot
+ 79 contributorshttps://github.com/Project-MONAI/tutorials/graphs/contributors
Jupyter Notebook 98.5% https://github.com/Project-MONAI/tutorials/search?l=jupyter-notebook
Python 1.4% https://github.com/Project-MONAI/tutorials/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
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