René's URL Explorer Experiment


Title: GitHub - PopicLab/varium: A synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development. · GitHub

Open Graph Title: GitHub - PopicLab/varium: A synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development.

X Title: GitHub - PopicLab/varium: A synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development.

Description: A synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development. - PopicLab/varium

Open Graph Description: A synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development. - PopicLab/varium

X Description: A synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development. - PopicLab/varium

Opengraph URL: https://github.com/PopicLab/varium

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:7d02ee73-da6e-30f2-58cd-178685f04aca
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8C9A:30E5B0:9A6031:DC7CEB:6A5F2E01
html-safe-nonce631452a6400019a0c0de3dccdb8490e36cb00d182bd590d8dd595b3a16c42aad
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4QzlBOjMwRTVCMDo5QTYwMzE6REM3Q0VCOjZBNUYyRTAxIiwidmlzaXRvcl9pZCI6IjI1NTcxMzY0NDUwNjYxMjg4OTciLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmacd706df67201cd1d1a8a357413909b8e00d3265d1d16fc44b3c1ec4772b2c9832
hovercard-subject-tagrepository:1161919542
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/PopicLab/varium
twitter:imagehttps://opengraph.githubassets.com/79e0efb023b694299c342c1e389c6d9658aaffd8528c865a09abc89b05c6b6e4/PopicLab/varium
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/79e0efb023b694299c342c1e389c6d9658aaffd8528c865a09abc89b05c6b6e4/PopicLab/varium
og:image:altA synthetic genome resource containing variants across different genomic contexts, designed for benchmarking and method development. - PopicLab/varium
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Noneaf57322612a2efc3d6fee860947245ffbb465e4e3f9eb5dfefc0f770217aa0ca
turbo-cache-controlno-cache
go-importgithub.com/PopicLab/varium git https://github.com/PopicLab/varium.git
octolytics-dimension-user_id86385991
octolytics-dimension-user_loginPopicLab
octolytics-dimension-repository_id1161919542
octolytics-dimension-repository_nwoPopicLab/varium
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1161919542
octolytics-dimension-repository_network_root_nwoPopicLab/varium
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release93fabb5edc1b64676979fa226fed14ab56431f54
ui-targetcanary-2
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/PopicLab/varium#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FPopicLab%2Fvarium
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
Code QualityEnforce quality at mergehttps://github.com/features/code-quality
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FPopicLab%2Fvarium
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=PopicLab%2Fvarium
Reloadhttps://github.com/PopicLab/varium
Reloadhttps://github.com/PopicLab/varium
Reloadhttps://github.com/PopicLab/varium
Please reload this pagehttps://github.com/PopicLab/varium
PopicLab https://github.com/PopicLab
variumhttps://github.com/PopicLab/varium
Notifications https://github.com/login?return_to=%2FPopicLab%2Fvarium
Fork 0 https://github.com/login?return_to=%2FPopicLab%2Fvarium
Star 1 https://github.com/login?return_to=%2FPopicLab%2Fvarium
Code https://github.com/PopicLab/varium
Issues 0 https://github.com/PopicLab/varium/issues
Pull requests 0 https://github.com/PopicLab/varium/pulls
Actions https://github.com/PopicLab/varium/actions
Projects https://github.com/PopicLab/varium/projects
Security and quality 0 https://github.com/PopicLab/varium/security
Insights https://github.com/PopicLab/varium/pulse
Code https://github.com/PopicLab/varium
Issues https://github.com/PopicLab/varium/issues
Pull requests https://github.com/PopicLab/varium/pulls
Actions https://github.com/PopicLab/varium/actions
Projects https://github.com/PopicLab/varium/projects
Security and quality https://github.com/PopicLab/varium/security
Insights https://github.com/PopicLab/varium/pulse
https://github.com/PopicLab/varium
Brancheshttps://github.com/PopicLab/varium/branches
Tagshttps://github.com/PopicLab/varium/tags
https://github.com/PopicLab/varium/branches
https://github.com/PopicLab/varium/tags
30 Commitshttps://github.com/PopicLab/varium/commits/main/
https://github.com/PopicLab/varium/commits/main/
docs/imgshttps://github.com/PopicLab/varium/tree/main/docs/imgs
docs/imgshttps://github.com/PopicLab/varium/tree/main/docs/imgs
workflowshttps://github.com/PopicLab/varium/tree/main/workflows
workflowshttps://github.com/PopicLab/varium/tree/main/workflows
LICENSEhttps://github.com/PopicLab/varium/blob/main/LICENSE
LICENSEhttps://github.com/PopicLab/varium/blob/main/LICENSE
README.mdhttps://github.com/PopicLab/varium/blob/main/README.md
README.mdhttps://github.com/PopicLab/varium/blob/main/README.md
READMEhttps://github.com/PopicLab/varium
MIT licensehttps://github.com/PopicLab/varium
https://github.com/PopicLab/varium#-varium-a-synthetic-genome-collection-for-multi-platform-sv-benchmarking
https://github.com/PopicLab/varium#table-of-contents
Overviewhttps://github.com/PopicLab/varium#overview
Dataset tiershttps://github.com/PopicLab/varium#datasets
Data generation workflowhttps://github.com/PopicLab/varium#generation
File typeshttps://github.com/PopicLab/varium#files
SV placementhttps://github.com/PopicLab/varium#placement
SV sizehttps://github.com/PopicLab/varium#size
Read characteristicshttps://github.com/PopicLab/varium#reads
https://github.com/PopicLab/varium#overview
VARium Google Buckethttps://console.cloud.google.com/storage/browser/varium
https://github.com/PopicLab/varium#-dataset-tiers
https://github.com/PopicLab/varium/blob/main/docs/imgs/eventTypes.png
https://github.com/PopicLab/varium#-data-generation-workflow
insilicoSVhttps://github.com/PopicLab/insilicoSV
https://github.com/PopicLab/varium/blob/main/docs/imgs/workflow.png
https://github.com/PopicLab/varium#-file-types
https://github.com/PopicLab/varium#-sv-placement
Repeat maskerhttp://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/rmsk.txt.gz
GRCh38_nonunique_l250_m0_e0.bed.gzhttps://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.6/GRCh38@all/Mappability/
GRCh38_segdups.bed.gzhttps://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.6/GRCh38@all/SegmentalDuplications/GRCh38_segdups.bed.gz
https://github.com/PopicLab/varium/blob/main/docs/imgs/samplots_demo.png
https://github.com/PopicLab/varium#-sv-size
https://github.com/PopicLab/varium/blob/main/docs/imgs/Tier1_SVsize_distribution.png
https://github.com/PopicLab/varium/blob/main/docs/imgs/Repeat_SVsize_distribution.png
https://github.com/PopicLab/varium/blob/main/docs/imgs/Tier2_SVsize_distribution.png
https://github.com/PopicLab/varium#-read-characteristics
pbsim3https://github.com/yukiteruono/pbsim3
https://sra-pub-src-2.s3.amazonaws.com/SRR10382244/m64011_190901_095311.fastq.1https://sra-pub-src-2.s3.amazonaws.com/SRR10382244/m64011_190901_095311.fastq.1
https://42basepairs.com/download/s3/ont-open-data/giab_2025.01/basecalling/hac/HG002/PAW70337/calls.sorted.bamhttps://42basepairs.com/download/s3/ont-open-data/giab_2025.01/basecalling/hac/HG002/PAW70337/calls.sorted.bam
https://github.com/PopicLab/varium/blob/main/docs/imgs/simRL.png
https://github.com/PopicLab/varium#️-reproduce-varium-data
https://github.com/PopicLab/varium#1-read-simulation
https://github.com/PopicLab/varium#2-alignment-assembly-and-downsampling
rasusahttps://github.com/mbhall88/rasusa
https://github.com/PopicLab/varium#3-regeneration-overview
Readme https://github.com/PopicLab/varium#readme-ov-file
MIT license https://github.com/PopicLab/varium#MIT-1-ov-file
Please reload this pagehttps://github.com/PopicLab/varium
Activityhttps://github.com/PopicLab/varium/activity
Custom propertieshttps://github.com/PopicLab/varium/custom-properties
0 forkshttps://github.com/PopicLab/varium/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FPopicLab%2Fvarium&report=PopicLab+%28user%29
Releaseshttps://github.com/PopicLab/varium/releases
Packages 0https://github.com/orgs/PopicLab/packages?repo_name=varium
Please reload this pagehttps://github.com/PopicLab/varium
Contributorshttps://github.com/PopicLab/varium/graphs/contributors
Please reload this pagehttps://github.com/PopicLab/varium
Shell 100.0% https://github.com/PopicLab/varium/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.