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Title: Warren/packaging by warren-davies4 · Pull Request #4 · NHSDigital/codonPython · GitHub

Open Graph Title: Warren/packaging by warren-davies4 · Pull Request #4 · NHSDigital/codonPython

X Title: Warren/packaging by warren-davies4 · Pull Request #4 · NHSDigital/codonPython

Description: Changes Packaging Added the pyproject.toml Added the poetry lockfile (this doesn't need reviewing) Folder structure Renamed to codonpython (it didn't seem to like the camel case) Updated folder structure to match typical package format (/src/packagename, and /tests/) Updates to deprecated code Updating the dependencies meant some of the older deprecated code didn't work. Some fixes: One-line change to a pandas df method (when passing aggregate function to df.groupyBy().agg(), you used to pass a built in function, e.g. sum, but that has since been deprecated. Now you need to pass the name of the function as a string e.g. "sum") Changed use of the deprecated df.append() to the newer pd.concat() in one place Changed pandas.util.testing.assert_frame_equal to the newer pandas.testing.assert_frame_equal Tweak to tests Added a path to the file import function tests. This forces them to scan the tests/ folder instead of the whole project directory, since these might indeed have csvs in them and cause the tests to fail. We will later need to add test csv and xlsx files in the tests/ folder, but that can be another ticker, I have made issues for these Set up Ignore the readme! :) If codespaces, do: pipx install poetry python -m venv venv source venv/bin/activate poetry install This will install dependecies and the current package. Then you can do: pytest tests/ It is published on Test PyPi so you could also do: pip install -i https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple codonpython and then for example: from codonpython import nhsNumber print(nhsNumber.nhsNumberValidator(1231231230)) >>>False

Open Graph Description: Changes Packaging Added the pyproject.toml Added the poetry lockfile (this doesn't need reviewing) Folder structure Renamed to codonpython (it didn't seem to like the camel case) Updated...

X Description: Changes Packaging Added the pyproject.toml Added the poetry lockfile (this doesn't need reviewing) Folder structure Renamed to codonpython (it didn't seem to like the camel case)...

Opengraph URL: https://github.com/NHSDigital/codonPython/pull/4

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3d067ca updated folder structure warren-davies4 Nov 5, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/3d067ca1d63b41740e8b825a21ef8c9c53c5393a
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6831af7 passed sum as string to .agg() instead of built-in sum function warren-davies4 Nov 5, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/6831af7f3ed13bb98278408016f89dda438c4a98
b0a1e69 updated check_tolerance() to replace deprecated df.append() with pd.c… warren-davies4 Nov 5, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/b0a1e69901d82189b8a9b6af072b378eebe68805
aa5e660 updated pandas.util.testing to pandas.testing warren-davies4 Nov 5, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/aa5e660c6c5b4c79acf27a6f15ee86e85369aa50
4bf45a1 added poetry.lock and updated pyproject.toml with dependencies warren-davies4 Nov 5, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/4bf45a115bba950c8a7e6d77a8032db66f75dfa2
95ef49b added path to tests/ in import_files() tests warren-davies4 Nov 6, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/95ef49b84f52f835dedb9a79c11db2004ca25011
3774dc3 removed upper version bound from dependencies in pyproject.toml warren-davies4 Nov 6, 2024 https://github.com/NHSDigital/codonPython/pull/4/commits/3774dc3f6daeb64818e97a6a43ba4bcacad64381
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codonPython/check_nat_val.py → src/codonpython/check_nat_val.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-c46e784b89a8873b72af890793da3727d02d889913634ac3f723e703663a44a2
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codonPython/check_null.py → src/codonpython/check_null.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-01fc860b7c497e0ebfb15ce539508cacddaa11c50c2b22874ec6c0b4bc86e676
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codonPython/dateValidator.py → src/codonpython/dateValidator.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-7a5f74e60333bd13ed647f5c156cc37b9ecfdcc5a30ec6cedb2f31ca29816ff4
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codonPython/file_utils.py → src/codonpython/file_utils.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-dc9e0af9457e32da5d5ff6458493c275a5e03c7fd82eda5c85d73e295996c115
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codonPython/nhsNumber.py → src/codonpython/nhsNumber.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-61542d8c08dd3a7c59c8ea5cbeffb2e5849c43c2a4f6010e6fdf412d3b5a247f
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codonPython/nhsd_colours.py → src/codonpython/nhsd_colours.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-4b2605b607eed04e11307d0fdb24c34913be78c88e9bb01a155d33f0388fd23e
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codonPython/suppression.py → src/codonpython/suppression.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-b04fedb1ea0953e56abaf64b697885afc9b768c5af5365b9cfab77715a160838
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codonPython/tableFromSql.py → src/codonpython/tableFromSql.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-599f3076ec12b6ee5f9279f3998a0246b6c6aee3453e624d676793e1a734c915
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codonPython/tolerance.py → src/codonpython/tolerance.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-d5f0881a2233952837ba40c180c76d70257aec62771ffebb3eaa0de2e86027a7
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codonPython/tests/age_bands_test.py → tests/age_bands_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-ad14fd797291f1912b4335888a9c7c71af2708fc9d61e7f8e5f6982c3a7f0528
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...n/tests/check_consistent_measures_test.py → tests/check_consistent_measures_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-70c2810e89e184240abbd6b41895703f2f6a366a2a653597d094003553170fc1
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...ests/check_consistent_submissions_test.py → tests/check_consistent_submissions_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-8479434f82e42137d2a398569aabe4b913badcd4de9f3ade0f185b51a5438586
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codonPython/tests/check_nat_val_test.py → tests/check_nat_val_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-ea78fb640a2047d86ac48616c52390899c2d7b9cbf67e14271c1d2388338212c
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codonPython/tests/check_null_test.py → tests/check_null_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-52157e40f0be4f16555483f7e1792ff7453e1e9d9e3fb73797cfbffe6de74b8e
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codonPython/tests/dateValidator_test.py → tests/dateValidator_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-57d53ccdd792ebe3b35aec574f67587c76e2c7cb8374ef4b9d62b7ff3b304df5
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codonPython/tests/file_utils_test.py → tests/file_utils_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-3a034d00f022bd91a2821462431c311b50184263858ca287ab0e1165f9ea9324
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codonPython/tests/nhsNumber_test.py → tests/nhsNumber_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-f6fe791235604e0a5144ca3018a59b3b517fc25642a714b6e8295410632e3cb8
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codonPython/tests/suppression_test.py → tests/suppression_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-6f646d0355be85dd68d5fc4dfd136a0ed3e488c170e4151ce7586bace08a5010
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codonPython/tests/tolerance_test.py → tests/tolerance_test.pyhttps://github.com/NHSDigital/codonPython/pull/4/files#diff-ae62e4230fa72b7cc8f8da05e4a654b27135229c9b27d1afbbb7d688258e85ab
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