René's URL Explorer Experiment


Title: GitHub - MouseLand/cellpose: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities · GitHub

Open Graph Title: GitHub - MouseLand/cellpose: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

X Title: GitHub - MouseLand/cellpose: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Description: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose

Open Graph Description: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose

X Description: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose

Opengraph URL: https://github.com/MouseLand/cellpose

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:28dce2fa-18d6-b8d9-a06e-9711e51a57f7
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8AEA:6507A:CE4A40E:D400529:6A4C5769
html-safe-nonce9fdaec09c8cc9061310fae3450da212539a8057b6e070449a9de045aeb7ae325
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4QUVBOjY1MDdBOkNFNEE0MEU6RDQwMDUyOTo2QTRDNTc2OSIsInZpc2l0b3JfaWQiOiI2MTM5NzMxMTA2NjE2NTk2MzI5IiwicmVnaW9uX2VkZ2UiOiJzZWEiLCJyZWdpb25fcmVuZGVyIjoic2VhIn0=
visitor-hmac92c5db7b7d8021c55b80518a4f04319c77984c2753a985a7292b8cfd0d2e5d84
hovercard-subject-tagrepository:237686847
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/MouseLand/cellpose
twitter:imagehttps://repository-images.githubusercontent.com/237686847/007d8780-460c-11ea-9a4e-2fed096278b5
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/237686847/007d8780-460c-11ea-9a4e-2fed096278b5
og:image:alta generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-controlno-cache
go-importgithub.com/MouseLand/cellpose git https://github.com/MouseLand/cellpose.git
octolytics-dimension-user_id28845184
octolytics-dimension-user_loginMouseLand
octolytics-dimension-repository_id237686847
octolytics-dimension-repository_nwoMouseLand/cellpose
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id237686847
octolytics-dimension-repository_network_root_nwoMouseLand/cellpose
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release14099438da5379150f15a2892474c7c7e6c0e55e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/MouseLand/cellpose#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FMouseLand%2Fcellpose
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FMouseLand%2Fcellpose
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=MouseLand%2Fcellpose
Reloadhttps://github.com/MouseLand/cellpose
Reloadhttps://github.com/MouseLand/cellpose
Reloadhttps://github.com/MouseLand/cellpose
Please reload this pagehttps://github.com/MouseLand/cellpose
MouseLand https://github.com/MouseLand
cellposehttps://github.com/MouseLand/cellpose
Notifications https://github.com/login?return_to=%2FMouseLand%2Fcellpose
Fork 638 https://github.com/login?return_to=%2FMouseLand%2Fcellpose
Star 2.3k https://github.com/login?return_to=%2FMouseLand%2Fcellpose
Code https://github.com/MouseLand/cellpose
Issues 26 https://github.com/MouseLand/cellpose/issues
Pull requests 37 https://github.com/MouseLand/cellpose/pulls
Actions https://github.com/MouseLand/cellpose/actions
Projects https://github.com/MouseLand/cellpose/projects
Security and quality 0 https://github.com/MouseLand/cellpose/security
Insights https://github.com/MouseLand/cellpose/pulse
Code https://github.com/MouseLand/cellpose
Issues https://github.com/MouseLand/cellpose/issues
Pull requests https://github.com/MouseLand/cellpose/pulls
Actions https://github.com/MouseLand/cellpose/actions
Projects https://github.com/MouseLand/cellpose/projects
Security and quality https://github.com/MouseLand/cellpose/security
Insights https://github.com/MouseLand/cellpose/pulse
https://github.com/MouseLand/cellpose
Brancheshttps://github.com/MouseLand/cellpose/branches
Tagshttps://github.com/MouseLand/cellpose/tags
https://github.com/MouseLand/cellpose/branches
https://github.com/MouseLand/cellpose/tags
1,629 Commitshttps://github.com/MouseLand/cellpose/commits/main/
https://github.com/MouseLand/cellpose/commits/main/
.githubhttps://github.com/MouseLand/cellpose/tree/main/.github
.githubhttps://github.com/MouseLand/cellpose/tree/main/.github
cellposehttps://github.com/MouseLand/cellpose/tree/main/cellpose
cellposehttps://github.com/MouseLand/cellpose/tree/main/cellpose
docshttps://github.com/MouseLand/cellpose/tree/main/docs
docshttps://github.com/MouseLand/cellpose/tree/main/docs
notebookshttps://github.com/MouseLand/cellpose/tree/main/notebooks
notebookshttps://github.com/MouseLand/cellpose/tree/main/notebooks
paperhttps://github.com/MouseLand/cellpose/tree/main/paper
paperhttps://github.com/MouseLand/cellpose/tree/main/paper
pyinstallerhttps://github.com/MouseLand/cellpose/tree/main/pyinstaller
pyinstallerhttps://github.com/MouseLand/cellpose/tree/main/pyinstaller
testshttps://github.com/MouseLand/cellpose/tree/main/tests
testshttps://github.com/MouseLand/cellpose/tree/main/tests
.gitignorehttps://github.com/MouseLand/cellpose/blob/main/.gitignore
.gitignorehttps://github.com/MouseLand/cellpose/blob/main/.gitignore
.readthedocs.ymlhttps://github.com/MouseLand/cellpose/blob/main/.readthedocs.yml
.readthedocs.ymlhttps://github.com/MouseLand/cellpose/blob/main/.readthedocs.yml
.style.yapfhttps://github.com/MouseLand/cellpose/blob/main/.style.yapf
.style.yapfhttps://github.com/MouseLand/cellpose/blob/main/.style.yapf
CONTRIBUTING.mdhttps://github.com/MouseLand/cellpose/blob/main/CONTRIBUTING.md
CONTRIBUTING.mdhttps://github.com/MouseLand/cellpose/blob/main/CONTRIBUTING.md
LICENSEhttps://github.com/MouseLand/cellpose/blob/main/LICENSE
LICENSEhttps://github.com/MouseLand/cellpose/blob/main/LICENSE
MANIFEST.inhttps://github.com/MouseLand/cellpose/blob/main/MANIFEST.in
MANIFEST.inhttps://github.com/MouseLand/cellpose/blob/main/MANIFEST.in
README.mdhttps://github.com/MouseLand/cellpose/blob/main/README.md
README.mdhttps://github.com/MouseLand/cellpose/blob/main/README.md
codecov.ymlhttps://github.com/MouseLand/cellpose/blob/main/codecov.yml
codecov.ymlhttps://github.com/MouseLand/cellpose/blob/main/codecov.yml
conftest.pyhttps://github.com/MouseLand/cellpose/blob/main/conftest.py
conftest.pyhttps://github.com/MouseLand/cellpose/blob/main/conftest.py
environment.ymlhttps://github.com/MouseLand/cellpose/blob/main/environment.yml
environment.ymlhttps://github.com/MouseLand/cellpose/blob/main/environment.yml
imagej_roi_converter.pyhttps://github.com/MouseLand/cellpose/blob/main/imagej_roi_converter.py
imagej_roi_converter.pyhttps://github.com/MouseLand/cellpose/blob/main/imagej_roi_converter.py
model_quantization.ipynbhttps://github.com/MouseLand/cellpose/blob/main/model_quantization.ipynb
model_quantization.ipynbhttps://github.com/MouseLand/cellpose/blob/main/model_quantization.ipynb
setup.cfghttps://github.com/MouseLand/cellpose/blob/main/setup.cfg
setup.cfghttps://github.com/MouseLand/cellpose/blob/main/setup.cfg
setup.pyhttps://github.com/MouseLand/cellpose/blob/main/setup.py
setup.pyhttps://github.com/MouseLand/cellpose/blob/main/setup.py
tox.inihttps://github.com/MouseLand/cellpose/blob/main/tox.ini
tox.inihttps://github.com/MouseLand/cellpose/blob/main/tox.ini
READMEhttps://github.com/MouseLand/cellpose
Contributinghttps://github.com/MouseLand/cellpose
BSD-3-Clause licensehttps://github.com/MouseLand/cellpose
https://github.com/MouseLand/cellpose#--cellpose--
https://camo.githubusercontent.com/eded2b19d541a149b71e23cd40fa4ce2dfd6158146b04687361704a48e084e26/687474703a2f2f7777772e63656c6c706f73652e6f72672f7374617469632f696d616765732f6c6f676f2e706e673f7261773d54727565
https://cellpose.readthedocs.io/en/latest/?badge=latest
https://github.com/mouseland/cellpose/actions/workflows/test_and_deploy.yml/badge.svg
https://codecov.io/gh/MouseLand/cellpose
https://badge.fury.io/py/cellpose
https://pepy.tech/project/cellpose
https://pepy.tech/project/cellpose
https://pypistats.org/packages/cellpose
https://github.com/MouseLand/cellpose/blob/master/LICENSE
https://github.com/MouseLand/cellpose/graphs/contributors
https://www.cellpose.org
https://forum.image.sc/tag/cellpose
https://github.com/MouseLand/cellpose/
https://github.com/MouseLand/cellpose/
https://github.com/MouseLand/cellpose/
paperhttps://www.biorxiv.org/content/10.1101/2025.04.28.651001v1
talkhttps://www.youtube.com/watch?v=KIdYXgQemcI
tutorial talkhttps://youtu.be/5qANHWoubZU
videohttps://youtu.be/3Y1VKcxjNy4
issuehttps://github.com/MouseLand/cellpose/issues
belowhttps://github.com/MouseLand/cellpose/blob/main/README.md/#Installation
cellpose.readthedocs.iohttps://cellpose.readthedocs.io/en/latest/
websitehttps://huggingface.co/spaces/mouseland/cellpose
run_Cellpose-SAM.ipynbhttps://github.com/MouseLand/cellpose/blob/main/notebooks/run_Cellpose-SAM.ipynb
https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/run_Cellpose-SAM.ipynb
test_Cellpose-SAM.ipynbhttps://github.com/MouseLand/cellpose/blob/main/notebooks/test_Cellpose-SAM.ipynb
https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/test_Cellpose-SAM.ipynb
train_Cellpose-SAM.ipynbhttps://github.com/MouseLand/cellpose/blob/main/notebooks/train_Cellpose-SAM.ipynb
https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/train_Cellpose-SAM.ipynb
https://github.com/MouseLand/cellpose#star2-v42-update-june-2026-star2
DINOv3https://github.com/facebookresearch/dinov3
herehttps://cellpose.readthedocs.io/en/latest/models.html
https://github.com/MouseLand/cellpose#citation
paperhttps://www.biorxiv.org/content/10.1101/2025.04.28.651001v1
paperhttps://t.co/kBMXmPp3Yn?amp=1
paperhttps://www.nature.com/articles/s41592-022-01663-4
paperhttps://www.nature.com/articles/s41592-025-02595-5
https://github.com/MouseLand/cellpose#old-updates
https://github.com/MouseLand/cellpose#v31-update-feb-2025
@GFleishmanhttps://github.com/GFleishman
herehttps://cellpose.readthedocs.io/en/latest/distributed.html
herehttps://cellpose.readthedocs.io/en/latest/do3d.html#segmentation-settings
benchmarkshttps://cellpose.readthedocs.io/en/latest/benchmark.html
https://github.com/MouseLand/cellpose#star2-v3-feb-2024-star2
paperhttps://www.nature.com/articles/s41592-025-02595-5
talkhttps://youtu.be/TZZZlGk6AKo
herehttps://cellpose.readthedocs.io/en/latest/restore.html
https://github.com/MouseLand/cellpose#star2-v20-april-2022-star2
threadhttps://twitter.com/marius10p/status/1511415409047650307?s=20&t=umTVIG1CFKIWHYMrQqFKyQ
paperhttps://www.nature.com/articles/s41592-022-01663-4
reviewhttps://www.nature.com/articles/s41592-022-01664-3
short talkhttps://youtu.be/wB7XYh4QRiI
tutorial talkhttps://youtu.be/5qANHWoubZU
videohttps://youtu.be/3Y1VKcxjNy4
docshttps://cellpose.readthedocs.io/en/latest/gui.html#training-your-own-cellpose-model
https://github.com/MouseLand/cellpose#installation
https://github.com/MouseLand/cellpose#local-installation--2-minutes
https://github.com/MouseLand/cellpose#system-requirements
https://github.com/MouseLand/cellpose#dependencies
pytorchhttps://pytorch.org/
pyqtgraphhttp://pyqtgraph.org/
PyQt6https://www.riverbankcomputing.com/software/pyqt/
numpyhttp://www.numpy.org/
scipyhttps://www.scipy.org/
natsorthttps://natsort.readthedocs.io/en/master/
tifffilehttps://github.com/cgohlke/tifffile
imagecodecshttps://github.com/cgohlke/imagecodecs
roifilehttps://github.com/cgohlke/roifile
fastremaphttps://github.com/seung-lab/fastremap/
fill_voidshttps://github.com/seung-lab/fill_voids/
https://github.com/MouseLand/cellpose#option-1-installation-instructions-with-conda
miniforgehttps://github.com/conda-forge/miniforge
herehttps://pypi.org/project/cellpose/
docshttps://cellpose.readthedocs.io/en/latest/installation.html
https://github.com/MouseLand/cellpose#option-2-installation-instructions-with-pythons-venv
tutorialhttps://docs.python-guide.org/dev/virtualenvs/#lower-level-virtualenv
python.orghttps://www.python.org/downloads/
https://github.com/MouseLand/cellpose#gpu-version-cuda-on-windows-or-linux
websitehttps://www.nvidia.com/Download/index.aspx?lang=en-us
herehttps://developer.nvidia.com/cuda-toolkit-archive
herehttps://pytorch.org/get-started/locally/
herehttps://pytorch.org/get-started/previous-versions/
https://github.com/MouseLand/cellpose#installation-of-github-version
https://github.com/MouseLand/cellpose#run-cellpose-10-without-local-python-installation
websitehttps://www.cellpose.org
Windows 10http://www.cellpose.org/windows
Mac OShttp://www.cellpose.org/mac
Mac OShttps://www.cellpose.org/mac
Windows 10https://www.cellpose.org/windows
https://github.com/MouseLand/cellpose#run-cellpose-locally
websitehttps://www.cellpose.org
zip filehttps://www.cellpose.org/static/images/demo_images.zip
https://github.com/MouseLand/cellpose#step-by-step-demo
zip filehttps://www.cellpose.org/static/images/demo_images.zip
herehttps://cellpose.readthedocs.io/en/latest/gui.html
https://github.com/MouseLand/cellpose#3d-segmentation
https://github.com/MouseLand/cellpose#contributions
https://github.com/MouseLand/cellpose#download-of-pretrained-models
huggingfacehttps://huggingface.co/mouseland/cellpose-sam/tree/main
websitehttps://www.cellpose.org
google drive zip filehttps://drive.google.com/file/d/1zHGFYCqRCTwTPwgEUMNZu0EhQy2zaovg/view?usp=sharing
https://pan.baidu.com/s/1CARpRGCBHIYaz7KeyoX-fghttps://pan.baidu.com/s/1CARpRGCBHIYaz7KeyoX-fg
huggingface.co/spaces/mouseland/cellposehttps://huggingface.co/spaces/mouseland/cellpose
segmentation https://github.com/topics/segmentation
cell-segmentation https://github.com/topics/cell-segmentation
cell-biology https://github.com/topics/cell-biology
Readme https://github.com/MouseLand/cellpose#readme-ov-file
BSD-3-Clause license https://github.com/MouseLand/cellpose#BSD-3-Clause-1-ov-file
Contributing https://github.com/MouseLand/cellpose#contributing-ov-file
Please reload this pagehttps://github.com/MouseLand/cellpose
Activityhttps://github.com/MouseLand/cellpose/activity
Custom propertieshttps://github.com/MouseLand/cellpose/custom-properties
638 forkshttps://github.com/MouseLand/cellpose/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FMouseLand%2Fcellpose&report=MouseLand+%28user%29
Releases 34https://github.com/MouseLand/cellpose/releases
v4.2.1.1 new Cellpose4 models! Latest Jun 14, 2026 https://github.com/MouseLand/cellpose/releases/tag/v4.2.1.1
+ 33 releaseshttps://github.com/MouseLand/cellpose/releases
Packages 0https://github.com/orgs/MouseLand/packages?repo_name=cellpose
Please reload this pagehttps://github.com/MouseLand/cellpose
Please reload this pagehttps://github.com/MouseLand/cellpose
Contributorshttps://github.com/MouseLand/cellpose/graphs/contributors
Please reload this pagehttps://github.com/MouseLand/cellpose
Python 58.4% https://github.com/MouseLand/cellpose/search?l=python
Jupyter Notebook 41.1% https://github.com/MouseLand/cellpose/search?l=jupyter-notebook
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.