René's URL Explorer Experiment


Title: GitHub - MadryLab/rla: Residue Level Alignment · GitHub

Open Graph Title: GitHub - MadryLab/rla: Residue Level Alignment

X Title: GitHub - MadryLab/rla: Residue Level Alignment

Description: Residue Level Alignment . Contribute to MadryLab/rla development by creating an account on GitHub.

Open Graph Description: Residue Level Alignment . Contribute to MadryLab/rla development by creating an account on GitHub.

X Description: Residue Level Alignment . Contribute to MadryLab/rla development by creating an account on GitHub.

Opengraph URL: https://github.com/MadryLab/rla

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:64f96ab8-98ff-49a7-0cfc-eaaf2a054476
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8252:237528:50E410:6D3587:6A4C788C
html-safe-nonceb3594e5b64fd0e40a3e595079dd7427c9b9f34881b8e3ea97dde77ffb52abbd4
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4MjUyOjIzNzUyODo1MEU0MTA6NkQzNTg3OjZBNEM3ODhDIiwidmlzaXRvcl9pZCI6IjkwNDY5NDQ4NTM4MTY4MDE0MjAiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac8b56550c4e00869e50d4b8e2d703dd0af4f4b61f9f62f29792a144bdcd3e58f8
hovercard-subject-tagrepository:727436935
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/MadryLab/rla
twitter:imagehttps://opengraph.githubassets.com/ea8a87332e72dc6fa5f696ab12ca08f5236c06393dc32f345774df2aa13fb661/MadryLab/rla
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/ea8a87332e72dc6fa5f696ab12ca08f5236c06393dc32f345774df2aa13fb661/MadryLab/rla
og:image:altResidue Level Alignment . Contribute to MadryLab/rla development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-controlno-cache
go-importgithub.com/MadryLab/rla git https://github.com/MadryLab/rla.git
octolytics-dimension-user_id27704668
octolytics-dimension-user_loginMadryLab
octolytics-dimension-repository_id727436935
octolytics-dimension-repository_nwoMadryLab/rla
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id727436935
octolytics-dimension-repository_network_root_nwoMadryLab/rla
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release56ac743bebb13694b888673bb7257f4b97a4b7fd
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/MadryLab/rla#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FMadryLab%2Frla
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FMadryLab%2Frla
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=MadryLab%2Frla
Reloadhttps://github.com/MadryLab/rla
Reloadhttps://github.com/MadryLab/rla
Reloadhttps://github.com/MadryLab/rla
Please reload this pagehttps://github.com/MadryLab/rla
MadryLab https://github.com/MadryLab
rlahttps://github.com/MadryLab/rla
Notifications https://github.com/login?return_to=%2FMadryLab%2Frla
Fork 4 https://github.com/login?return_to=%2FMadryLab%2Frla
Star 22 https://github.com/login?return_to=%2FMadryLab%2Frla
Code https://github.com/MadryLab/rla
Issues 0 https://github.com/MadryLab/rla/issues
Pull requests 0 https://github.com/MadryLab/rla/pulls
Actions https://github.com/MadryLab/rla/actions
Projects https://github.com/MadryLab/rla/projects
Security and quality 0 https://github.com/MadryLab/rla/security
Insights https://github.com/MadryLab/rla/pulse
Code https://github.com/MadryLab/rla
Issues https://github.com/MadryLab/rla/issues
Pull requests https://github.com/MadryLab/rla/pulls
Actions https://github.com/MadryLab/rla/actions
Projects https://github.com/MadryLab/rla/projects
Security and quality https://github.com/MadryLab/rla/security
Insights https://github.com/MadryLab/rla/pulse
https://github.com/MadryLab/rla
Brancheshttps://github.com/MadryLab/rla/branches
Tagshttps://github.com/MadryLab/rla/tags
https://github.com/MadryLab/rla/branches
https://github.com/MadryLab/rla/tags
32 Commitshttps://github.com/MadryLab/rla/commits/main/
https://github.com/MadryLab/rla/commits/main/
__pycache__https://github.com/MadryLab/rla/tree/main/__pycache__
__pycache__https://github.com/MadryLab/rla/tree/main/__pycache__
esm_model_150https://github.com/MadryLab/rla/tree/main/esm_model_150
esm_model_150https://github.com/MadryLab/rla/tree/main/esm_model_150
example_notebookshttps://github.com/MadryLab/rla/tree/main/example_notebooks
example_notebookshttps://github.com/MadryLab/rla/tree/main/example_notebooks
model_weights/version_0https://github.com/MadryLab/rla/tree/main/model_weights/version_0
model_weights/version_0https://github.com/MadryLab/rla/tree/main/model_weights/version_0
pdbshttps://github.com/MadryLab/rla/tree/main/pdbs
pdbshttps://github.com/MadryLab/rla/tree/main/pdbs
srchttps://github.com/MadryLab/rla/tree/main/src
srchttps://github.com/MadryLab/rla/tree/main/src
terminatorhttps://github.com/MadryLab/rla/tree/main/terminator
terminatorhttps://github.com/MadryLab/rla/tree/main/terminator
terminator_configshttps://github.com/MadryLab/rla/tree/main/terminator_configs
terminator_configshttps://github.com/MadryLab/rla/tree/main/terminator_configs
terminator_utilshttps://github.com/MadryLab/rla/tree/main/terminator_utils
terminator_utilshttps://github.com/MadryLab/rla/tree/main/terminator_utils
.gitattributeshttps://github.com/MadryLab/rla/blob/main/.gitattributes
.gitattributeshttps://github.com/MadryLab/rla/blob/main/.gitattributes
2023_12_11_rla_utils.ipynbhttps://github.com/MadryLab/rla/blob/main/2023_12_11_rla_utils.ipynb
2023_12_11_rla_utils.ipynbhttps://github.com/MadryLab/rla/blob/main/2023_12_11_rla_utils.ipynb
LICENSEhttps://github.com/MadryLab/rla/blob/main/LICENSE
LICENSEhttps://github.com/MadryLab/rla/blob/main/LICENSE
README.mdhttps://github.com/MadryLab/rla/blob/main/README.md
README.mdhttps://github.com/MadryLab/rla/blob/main/README.md
WDS_functions.pyhttps://github.com/MadryLab/rla/blob/main/WDS_functions.py
WDS_functions.pyhttps://github.com/MadryLab/rla/blob/main/WDS_functions.py
clip_main.pyhttps://github.com/MadryLab/rla/blob/main/clip_main.py
clip_main.pyhttps://github.com/MadryLab/rla/blob/main/clip_main.py
rla.ymlhttps://github.com/MadryLab/rla/blob/main/rla.yml
rla.ymlhttps://github.com/MadryLab/rla/blob/main/rla.yml
run_RLA.ipynbhttps://github.com/MadryLab/rla/blob/main/run_RLA.ipynb
run_RLA.ipynbhttps://github.com/MadryLab/rla/blob/main/run_RLA.ipynb
write_WDS.ipynbhttps://github.com/MadryLab/rla/blob/main/write_WDS.ipynb
write_WDS.ipynbhttps://github.com/MadryLab/rla/blob/main/write_WDS.ipynb
READMEhttps://github.com/MadryLab/rla
MIT licensehttps://github.com/MadryLab/rla
https://github.com/MadryLab/rla#jointly-embedding-protein-structures-and-sequences-through-residue-level-alignment
"Jointly Embedding Protein Structures and Sequences through Residue Level Alignment"https://www.mlsb.io/papers_2023/Jointly_Embedding_Protein_Structures_and_Sequences_through_Residue_Level_Alignment.pdf
https://github.com/MadryLab/rla#setup
https://github.com/MadryLab/rla#requirements
rla_env.ymlhttps://github.com/MadryLab/rla/blob/main/rla_env.yml
https://github.com/MadryLab/rla#model-weights-and-data
herehttps://www.dropbox.com/scl/fo/97tmmxudd9yftv5p4fywm/h?rlkey=7ezbmiorplryxmy42gjuojz34&dl=0
example_datahttps://github.com/MadryLab/rla/blob/main/example_data
https://github.com/MadryLab/rla#inference
transformershttps://huggingface.co/docs/transformers/index
https://github.com/MadryLab/rla#binding-filtering
https://github.com/MadryLab/rla#monomer-ranking
herehttps://github.com/MadryLab/rla/blob/main/example_notebooks/example_decoy.ipynb
Roney and Ovchinnikov, 2022https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.129.238101
https://github.com/MadryLab/rla#mutation-effect-prediction
herehttps://github.com/MadryLab/rla/blob/main/example_notebooks/example_mutation.ipynb
Tsuboyama et al., 2023https://www.nature.com/articles/s41586-023-06328-6
https://github.com/MadryLab/rla#contact-prediction
herehttps://github.com/MadryLab/rla/blob/main/example_notebooks/example_contact.ipynb
https://github.com/MadryLab/rla#training
https://github.com/MadryLab/rla#funding
Readme https://github.com/MadryLab/rla#readme-ov-file
MIT license https://github.com/MadryLab/rla#MIT-1-ov-file
Please reload this pagehttps://github.com/MadryLab/rla
Activityhttps://github.com/MadryLab/rla/activity
Custom propertieshttps://github.com/MadryLab/rla/custom-properties
4 forkshttps://github.com/MadryLab/rla/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FMadryLab%2Frla&report=MadryLab+%28user%29
Releaseshttps://github.com/MadryLab/rla/releases
Packages 0https://github.com/orgs/MadryLab/packages?repo_name=rla
Please reload this pagehttps://github.com/MadryLab/rla
Please reload this pagehttps://github.com/MadryLab/rla
Contributorshttps://github.com/MadryLab/rla/graphs/contributors
Please reload this pagehttps://github.com/MadryLab/rla
Python 58.2% https://github.com/MadryLab/rla/search?l=python
Jupyter Notebook 39.9% https://github.com/MadryLab/rla/search?l=jupyter-notebook
Shell 1.9% https://github.com/MadryLab/rla/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.