René's URL Explorer Experiment


Title: GitHub - MachineLearningJournalClub/CLAM: Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering · GitHub

Open Graph Title: GitHub - MachineLearningJournalClub/CLAM: Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

X Title: GitHub - MachineLearningJournalClub/CLAM: Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

Description: Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering - MachineLearningJournalClub/CLAM

Open Graph Description: Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering - MachineLearningJournalClub/CLAM

X Description: Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering - MachineLearningJournalClub/CLAM

Opengraph URL: https://github.com/MachineLearningJournalClub/CLAM

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5bc78ce5-e58d-5b15-e561-0217cf1065a1
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idE566:13B1D:730543:9DD343:6A4C7F92
html-safe-nonce02c238edb9476d167cf3d71d705b61e423b4b099b4a41586cc8cc43d528516fe
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFNTY2OjEzQjFEOjczMDU0Mzo5REQzNDM6NkE0QzdGOTIiLCJ2aXNpdG9yX2lkIjoiMTY4MDY4NzEzNDk2NzM2NTUyMiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac6d205b3d41fbde82407e7203c502a03acb727e0ff9aa7524ce87eba5e555269b
hovercard-subject-tagrepository:610779274
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/MachineLearningJournalClub/CLAM
twitter:imagehttps://opengraph.githubassets.com/f1c6c0f8defb4b303d42cd06e725e10081188e98dcca454cf5bbac8dbfd4f594/MachineLearningJournalClub/CLAM
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/f1c6c0f8defb4b303d42cd06e725e10081188e98dcca454cf5bbac8dbfd4f594/MachineLearningJournalClub/CLAM
og:image:altData-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering - MachineLearningJournalClub/CLAM
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-controlno-cache
go-importgithub.com/MachineLearningJournalClub/CLAM git https://github.com/MachineLearningJournalClub/CLAM.git
octolytics-dimension-user_id71293183
octolytics-dimension-user_loginMachineLearningJournalClub
octolytics-dimension-repository_id610779274
octolytics-dimension-repository_nwoMachineLearningJournalClub/CLAM
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id252214049
octolytics-dimension-repository_parent_nwomahmoodlab/CLAM
octolytics-dimension-repository_network_root_id252214049
octolytics-dimension-repository_network_root_nwomahmoodlab/CLAM
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasecd470457e909b9d062f8002cf438ba870e6acff6
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/MachineLearningJournalClub/CLAM#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FMachineLearningJournalClub%2FCLAM
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FMachineLearningJournalClub%2FCLAM
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=MachineLearningJournalClub%2FCLAM
Reloadhttps://github.com/MachineLearningJournalClub/CLAM
Reloadhttps://github.com/MachineLearningJournalClub/CLAM
Reloadhttps://github.com/MachineLearningJournalClub/CLAM
Please reload this pagehttps://github.com/MachineLearningJournalClub/CLAM
MachineLearningJournalClub https://github.com/MachineLearningJournalClub
CLAMhttps://github.com/MachineLearningJournalClub/CLAM
mahmoodlab/CLAMhttps://github.com/mahmoodlab/CLAM
Notifications https://github.com/login?return_to=%2FMachineLearningJournalClub%2FCLAM
Fork 0 https://github.com/login?return_to=%2FMachineLearningJournalClub%2FCLAM
Star 0 https://github.com/login?return_to=%2FMachineLearningJournalClub%2FCLAM
Code https://github.com/MachineLearningJournalClub/CLAM
Pull requests 0 https://github.com/MachineLearningJournalClub/CLAM/pulls
Actions https://github.com/MachineLearningJournalClub/CLAM/actions
Projects https://github.com/MachineLearningJournalClub/CLAM/projects
Security and quality 0 https://github.com/MachineLearningJournalClub/CLAM/security
Insights https://github.com/MachineLearningJournalClub/CLAM/pulse
Code https://github.com/MachineLearningJournalClub/CLAM
Pull requests https://github.com/MachineLearningJournalClub/CLAM/pulls
Actions https://github.com/MachineLearningJournalClub/CLAM/actions
Projects https://github.com/MachineLearningJournalClub/CLAM/projects
Security and quality https://github.com/MachineLearningJournalClub/CLAM/security
Insights https://github.com/MachineLearningJournalClub/CLAM/pulse
https://github.com/MachineLearningJournalClub/CLAM
Brancheshttps://github.com/MachineLearningJournalClub/CLAM/branches
Tagshttps://github.com/MachineLearningJournalClub/CLAM/tags
https://github.com/MachineLearningJournalClub/CLAM/branches
https://github.com/MachineLearningJournalClub/CLAM/tags
94 Commitshttps://github.com/MachineLearningJournalClub/CLAM/commits/master/
https://github.com/MachineLearningJournalClub/CLAM/commits/master/
dataset_csvhttps://github.com/MachineLearningJournalClub/CLAM/tree/master/dataset_csv
dataset_csvhttps://github.com/MachineLearningJournalClub/CLAM/tree/master/dataset_csv
datasetshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/datasets
datasetshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/datasets
docshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/docs
docshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/docs
heatmapshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/heatmaps
heatmapshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/heatmaps
modelshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/models
modelshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/models
presetshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/presets
presetshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/presets
splitshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/splits
splitshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/splits
utilshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/utils
utilshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/utils
vis_utilshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/vis_utils
vis_utilshttps://github.com/MachineLearningJournalClub/CLAM/tree/master/vis_utils
wsi_corehttps://github.com/MachineLearningJournalClub/CLAM/tree/master/wsi_core
wsi_corehttps://github.com/MachineLearningJournalClub/CLAM/tree/master/wsi_core
.gitignorehttps://github.com/MachineLearningJournalClub/CLAM/blob/master/.gitignore
.gitignorehttps://github.com/MachineLearningJournalClub/CLAM/blob/master/.gitignore
LICENSE.mdhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/LICENSE.md
LICENSE.mdhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/LICENSE.md
build_preset.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/build_preset.py
build_preset.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/build_preset.py
create_heatmaps.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_heatmaps.py
create_heatmaps.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_heatmaps.py
create_patches.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_patches.py
create_patches.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_patches.py
create_patches_fp.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_patches_fp.py
create_patches_fp.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_patches_fp.py
create_splits_seq.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_splits_seq.py
create_splits_seq.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/create_splits_seq.py
eval.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/eval.py
eval.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/eval.py
extract_features.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/extract_features.py
extract_features.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/extract_features.py
extract_features_fp.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/extract_features_fp.py
extract_features_fp.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/extract_features_fp.py
main.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/main.py
main.pyhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/main.py
READMEhttps://github.com/MachineLearningJournalClub/CLAM
Licensehttps://github.com/MachineLearningJournalClub/CLAM
https://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/clam-logo.png
https://github.com/MachineLearningJournalClub/CLAM#clam-
ArXivhttps://arxiv.org/abs/2004.09666
Journal Linkhttps://www.nature.com/articles/s41551-020-00682-w
Interactive Demohttp://clam.mahmoodlab.org
Citehttps://github.com/MachineLearningJournalClub/CLAM#reference
http://clam.mahmoodlab.org
https://github.com/MachineLearningJournalClub/CLAM#clam-a-deep-learning-based-pipeline-for-data-efficient-and-weakly-supervised-whole-slide-level-analysis
Pre-requisiteshttps://github.com/MachineLearningJournalClub/CLAM#pre-requisites
Installationhttps://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/INSTALLATION.md
Segmentation and Patchinghttps://github.com/MachineLearningJournalClub/CLAM#wsi-segmentation-and-patching
Feature Extractionhttps://github.com/MachineLearningJournalClub/CLAM#weakly-supervised-learning-using-slide-level-labels-with-clam
Weakly Supervised Traininghttps://github.com/MachineLearningJournalClub/CLAM#Training-Splits
Testinghttps://github.com/MachineLearningJournalClub/CLAM#Testing-and-Evaluation-Script
Trained Modelshttps://github.com/MachineLearningJournalClub/CLAM#Trained-Model-Checkpoints
Heatmap Visualizationhttps://github.com/MachineLearningJournalClub/CLAM#Heatmap-Visualization
Exampleshttps://github.com/MachineLearningJournalClub/CLAM#examples
Pre-printhttps://arxiv.org/abs/2004.09666
Demohttp://clam.mahmoodlab.org
Citehttps://github.com/MachineLearningJournalClub/CLAM#reference
Mahmood Labhttp://www.mahmoodlab.org
https://github.com/MachineLearningJournalClub/CLAM#updates
Heatmap visualization for demo and instructions.https://github.com/MachineLearningJournalClub/CLAM#Heatmap-Visualization
Guide for Old Pipelinehttps://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/README_old.md
https://github.com/MachineLearningJournalClub/CLAM#pre-requisites
Installation guidehttps://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/INSTALLATION.md
https://github.com/MachineLearningJournalClub/CLAM#wsi-segmentation-and-patching
https://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/CLAM1.jpg
https://github.com/MachineLearningJournalClub/CLAM#basic-fully-automated-run
https://github.com/MachineLearningJournalClub/CLAM#custom-default-segmentation-parameters
https://github.com/MachineLearningJournalClub/CLAM#two-step-run-mannually-adjust-parameters-for-specific-slides
https://github.com/MachineLearningJournalClub/CLAM#weakly-supervised-learning-using-slide-level-labels-with-clam
https://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/CLAM2.jpg
https://github.com/MachineLearningJournalClub/CLAM#feature-extraction-gpu-example
https://github.com/MachineLearningJournalClub/CLAM#datasets
https://github.com/MachineLearningJournalClub/CLAM#training-splits
https://github.com/MachineLearningJournalClub/CLAM#gpu-training-example-for-binary-positive-vs-negative-classification-eg-lymph-node-status
https://github.com/MachineLearningJournalClub/CLAM#gpu-training-example-for-subtyping-problems-eg-3-class-rcc-subtyping
https://github.com/MachineLearningJournalClub/CLAM#testing-and-evaluation-script
https://github.com/MachineLearningJournalClub/CLAM#heatmap-visualization
https://github.com/MachineLearningJournalClub/CLAM#trained-model-checkpoints
herehttps://drive.google.com/drive/folders/1NZ82z0U_cexP6zkx1mRk-QeJyKWk4Q7z?usp=sharing
https://github.com/MachineLearningJournalClub/CLAM#examples
interactive demohttp://clam.mahmoodlab.org
https://github.com/MachineLearningJournalClub/CLAM/blob/master/docs/fig-git-hm.jpg
http://clam.mahmoodlab.orghttp://clam.mahmoodlab.org
https://github.com/MachineLearningJournalClub/CLAM#issues
https://github.com/MachineLearningJournalClub/CLAM#license
Mahmood Labhttp://www.mahmoodlab.org
https://github.com/MachineLearningJournalClub/CLAM#funding
R35GM138216https://reporter.nih.gov/search/sWDcU5IfAUCabqoThQ26GQ/project-details/10029418
https://github.com/MachineLearningJournalClub/CLAM#reference
paperhttps://www.nature.com/articles/s41551-020-00682-w
https://doi.org/10.1038/s41551-020-00682-whttps://doi.org/10.1038/s41551-020-00682-w
clam.mahmoodlab.orghttp://clam.mahmoodlab.org
Readme https://github.com/MachineLearningJournalClub/CLAM#readme-ov-file
GPL-3.0 license https://github.com/MachineLearningJournalClub/CLAM#GPL-3.0-1-ov-file
Please reload this pagehttps://github.com/MachineLearningJournalClub/CLAM
Activityhttps://github.com/MachineLearningJournalClub/CLAM/activity
Custom propertieshttps://github.com/MachineLearningJournalClub/CLAM/custom-properties
0 forkshttps://github.com/MachineLearningJournalClub/CLAM/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FMachineLearningJournalClub%2FCLAM&report=MachineLearningJournalClub+%28user%29
Releaseshttps://github.com/MachineLearningJournalClub/CLAM/releases
Packages 0https://github.com/orgs/MachineLearningJournalClub/packages?repo_name=CLAM
Please reload this pagehttps://github.com/MachineLearningJournalClub/CLAM
Contributorshttps://github.com/MachineLearningJournalClub/CLAM/graphs/contributors
Please reload this pagehttps://github.com/MachineLearningJournalClub/CLAM
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.