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337 Commitshttps://github.com/MaayanLab/HarmonizomePythonScripts/commits/master/
https://github.com/MaayanLab/HarmonizomePythonScripts/commits/master/
ARCHS4https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ARCHS4
ARCHS4https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ARCHS4
Achilles/Cell Line Gene Essentiality Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Achilles/Cell%20Line%20Gene%20Essentiality%20Profiles
Achilles/Cell Line Gene Essentiality Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Achilles/Cell%20Line%20Gene%20Essentiality%20Profiles
Allen Brain Atlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Allen%20Brain%20Atlas
Allen Brain Atlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Allen%20Brain%20Atlas
BioGPShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/BioGPS
BioGPShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/BioGPS
BioPlanethttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/BioPlanet
BioPlanethttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/BioPlanet
BioPlexhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/BioPlex
BioPlexhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/BioPlex
Biocarta/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Biocarta/Pathways
Biocarta/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Biocarta/Pathways
CCLEhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CCLE
CCLEhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CCLE
CM4AI/U2OS Cell Map Protein Localization Assemblieshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CM4AI/U2OS%20Cell%20Map%20Protein%20Localization%20Assemblies
CM4AI/U2OS Cell Map Protein Localization Assemblieshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CM4AI/U2OS%20Cell%20Map%20Protein%20Localization%20Assemblies
COMPARTMENTShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/COMPARTMENTS
COMPARTMENTShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/COMPARTMENTS
CORUM/Protein Complexeshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CORUM/Protein%20Complexes
CORUM/Protein Complexeshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CORUM/Protein%20Complexes
COSMIChttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/COSMIC
COSMIChttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/COSMIC
CTDhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CTD
CTDhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CTD
CellMarker/Gene-Cell Type Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CellMarker/Gene-Cell%20Type%20Associations
CellMarker/Gene-Cell Type Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CellMarker/Gene-Cell%20Type%20Associations
ChEA/Transcription Factor Targetshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ChEA/Transcription%20Factor%20Targets
ChEA/Transcription Factor Targetshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ChEA/Transcription%20Factor%20Targets
Chip Atlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Chip%20Atlas
Chip Atlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Chip%20Atlas
ClinVarhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ClinVar
ClinVarhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ClinVar
DEPOD/Substrates of Phosphataseshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DEPOD/Substrates%20of%20Phosphatases
DEPOD/Substrates of Phosphataseshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DEPOD/Substrates%20of%20Phosphatases
DISEASEShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DISEASES
DISEASEShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DISEASES
DSigDBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DSigDB
DSigDBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DSigDB
DeepCoverMOA/Drug Mechanisms of Actionhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DeepCoverMOA/Drug%20Mechanisms%20of%20Action
DeepCoverMOA/Drug Mechanisms of Actionhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DeepCoverMOA/Drug%20Mechanisms%20of%20Action
DepMap/CRISPR Gene Dependencyhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DepMap/CRISPR%20Gene%20Dependency
DepMap/CRISPR Gene Dependencyhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DepMap/CRISPR%20Gene%20Dependency
DisGeNEThttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DisGeNET
DisGeNEThttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/DisGeNET
Drugbankhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Drugbank
Drugbankhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Drugbank
ESCAPE/Omics Signatures of Genes and Proteins for Stem Cellshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ESCAPE/Omics%20Signatures%20of%20Genes%20and%20Proteins%20for%20Stem%20Cells
ESCAPE/Omics Signatures of Genes and Proteins for Stem Cellshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ESCAPE/Omics%20Signatures%20of%20Genes%20and%20Proteins%20for%20Stem%20Cells
Encodehttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Encode
Encodehttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Encode
FDA Approved Orphan Drug Listhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/FDA%20Approved%20Orphan%20Drug%20List
FDA Approved Orphan Drug Listhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/FDA%20Approved%20Orphan%20Drug%20List
GADhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GAD
GADhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GAD
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GARDhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GARD
GDSChttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GDSC
GDSChttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GDSC
GEOhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GEO
GEOhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GEO
GOhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GO
GOhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GO
GTExhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GTEx
GTExhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GTEx
GWAS Catalog/SNP-Phenotype Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GWAS%20Catalog/SNP-Phenotype%20Associations
GWAS Catalog/SNP-Phenotype Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GWAS%20Catalog/SNP-Phenotype%20Associations
GWASdbhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GWASdb
GWASdbhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GWASdb
GeneRIF/Biological Term Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GeneRIF/Biological%20Term%20Annotations
GeneRIF/Biological Term Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GeneRIF/Biological%20Term%20Annotations
GeneSigDB/Published Gene Signatureshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GeneSigDB/Published%20Gene%20Signatures
GeneSigDB/Published Gene Signatureshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GeneSigDB/Published%20Gene%20Signatures
GlyGen/Glycosylated Proteinshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GlyGen/Glycosylated%20Proteins
GlyGen/Glycosylated Proteinshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GlyGen/Glycosylated%20Proteins
Guide to Pharmacologyhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Guide%20to%20Pharmacology
Guide to Pharmacologyhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Guide%20to%20Pharmacology
HMDBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HMDB
HMDBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HMDB
HPAhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HPA
HPAhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HPA
HPM/Cell Type and Tissue Protein Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HPM/Cell%20Type%20and%20Tissue%20Protein%20Expression%20Profiles
HPM/Cell Type and Tissue Protein Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HPM/Cell%20Type%20and%20Tissue%20Protein%20Expression%20Profiles
HPO/Gene-Disease Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HPO/Gene-Disease%20Associations
HPO/Gene-Disease Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HPO/Gene-Disease%20Associations
Heiser et al./Cell Line Gene Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Heiser%20et%20al./Cell%20Line%20Gene%20Expression%20Profiles
Heiser et al./Cell Line Gene Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Heiser%20et%20al./Cell%20Line%20Gene%20Expression%20Profiles
HuBMAPhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HuBMAP
HuBMAPhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HuBMAP
HuGE Navigator/Gene-Phenotype Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HuGE%20Navigator/Gene-Phenotype%20Associations
HuGE Navigator/Gene-Phenotype Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HuGE%20Navigator/Gene-Phenotype%20Associations
Hub Proteins/Protein-Protein Interactionshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Hub%20Proteins/Protein-Protein%20Interactions
Hub Proteins/Protein-Protein Interactionshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Hub%20Proteins/Protein-Protein%20Interactions
HumanCyc/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HumanCyc/Pathways
HumanCyc/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/HumanCyc/Pathways
IMPC/Knockout Mouse Phenotypeshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/IMPC/Knockout%20Mouse%20Phenotypes
IMPC/Knockout Mouse Phenotypeshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/IMPC/Knockout%20Mouse%20Phenotypes
InterPro/Predicted Protein Domain Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/InterPro/Predicted%20Protein%20Domain%20Annotations
InterPro/Predicted Protein Domain Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/InterPro/Predicted%20Protein%20Domain%20Annotations
Jaspar PWMshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Jaspar%20PWMs
Jaspar PWMshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Jaspar%20PWMs
Jensenhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Jensen
Jensenhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Jensen
KEA/Substrates of Kinaseshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KEA/Substrates%20of%20Kinases
KEA/Substrates of Kinaseshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KEA/Substrates%20of%20Kinases
KEGG/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KEGG/Pathways
KEGG/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KEGG/Pathways
KinaseLibraryhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KinaseLibrary
KinaseLibraryhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KinaseLibrary
KinomeScan-Appyterhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KinomeScan-Appyter
KinomeScan-Appyterhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KinomeScan-Appyter
Klijn et al.https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Klijn%20et%20al.
Klijn et al.https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Klijn%20et%20al.
KnockTF/Gene Expression Profiles with Transcription Factor Perturbationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KnockTF/Gene%20Expression%20Profiles%20with%20Transcription%20Factor%20Perturbations
KnockTF/Gene Expression Profiles with Transcription Factor Perturbationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/KnockTF/Gene%20Expression%20Profiles%20with%20Transcription%20Factor%20Perturbations
LINCS Kinativ/Kinase Inhibition Bioactivity Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LINCS%20Kinativ/Kinase%20Inhibition%20Bioactivity%20Profiles
LINCS Kinativ/Kinase Inhibition Bioactivity Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LINCS%20Kinativ/Kinase%20Inhibition%20Bioactivity%20Profiles
LINCS KinomeScan/Kinase Inhibitor Targetshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LINCS%20KinomeScan/Kinase%20Inhibitor%20Targets
LINCS KinomeScan/Kinase Inhibitor Targetshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LINCS%20KinomeScan/Kinase%20Inhibitor%20Targets
LINCS L1000 CMaphttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LINCS%20L1000%20CMap
LINCS L1000 CMaphttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LINCS%20L1000%20CMap
LOCATEhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LOCATE
LOCATEhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/LOCATE
MGI/Mouse Phenotype Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MGI/Mouse%20Phenotype%20Associations
MGI/Mouse Phenotype Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MGI/Mouse%20Phenotype%20Associations
MSigDBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MSigDB
MSigDBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MSigDB
MW/Enzyme Metabolite Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MW/Enzyme%20Metabolite%20Associations
MW/Enzyme Metabolite Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MW/Enzyme%20Metabolite%20Associations
MoTrPAC/Rat Endurance Exercise Traininghttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MoTrPAC/Rat%20Endurance%20Exercise%20Training
MoTrPAC/Rat Endurance Exercise Traininghttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MoTrPAC/Rat%20Endurance%20Exercise%20Training
MotifMap/Predicted Transcription Factor Targetshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MotifMap/Predicted%20Transcription%20Factor%20Targets
MotifMap/Predicted Transcription Factor Targetshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/MotifMap/Predicted%20Transcription%20Factor%20Targets
NIBR/DRUG-seq U2OS MoA Box Gene Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/NIBR/DRUG-seq%20U2OS%20MoA%20Box%20Gene%20Expression%20Profiles
NIBR/DRUG-seq U2OS MoA Box Gene Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/NIBR/DRUG-seq%20U2OS%20MoA%20Box%20Gene%20Expression%20Profiles
NORDhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/NORD
NORDhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/NORD
NURSAhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/NURSA
NURSAhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/NURSA
OMIM/Gene-Disease Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/OMIM/Gene-Disease%20Associations
OMIM/Gene-Disease Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/OMIM/Gene-Disease%20Associations
Orphanethttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Orphanet
Orphanethttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Orphanet
PANTHER/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PANTHER/Pathways
PANTHER/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PANTHER/Pathways
PFOCR/Pathway Figure Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PFOCR/Pathway%20Figure%20Associations
PFOCR/Pathway Figure Associationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PFOCR/Pathway%20Figure%20Associations
PHGKBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PHGKB
PHGKBhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PHGKB
PID/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PID/Pathways
PID/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PID/Pathways
Pathway Commonshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Pathway%20Commons
Pathway Commonshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Pathway%20Commons
PerturbAtlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PerturbAtlas
PerturbAtlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PerturbAtlas
PheWebhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PheWeb
PheWebhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PheWeb
PhosphoSitePlushttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PhosphoSitePlus
PhosphoSitePlushttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/PhosphoSitePlus
Phosphosite Textmining/Biological Term Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Phosphosite%20Textmining/Biological%20Term%20Annotations
Phosphosite Textmining/Biological Term Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Phosphosite%20Textmining/Biological%20Term%20Annotations
ProteomicsDB/Cell Type and Tissue Protein Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ProteomicsDB/Cell%20Type%20and%20Tissue%20Protein%20Expression%20Profiles
ProteomicsDB/Cell Type and Tissue Protein Expression Profileshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/ProteomicsDB/Cell%20Type%20and%20Tissue%20Protein%20Expression%20Profiles
RDConnecthttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/RDConnect
RDConnecthttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/RDConnect
RareListhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/RareList
RareListhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/RareList
Reactome/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Reactome/Pathways
Reactome/Pathwayshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Reactome/Pathways
Replogle et al.https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Replogle%20et%20al.
Replogle et al.https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Replogle%20et%20al.
Roadmap Epigenomicshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Roadmap%20Epigenomics
Roadmap Epigenomicshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Roadmap%20Epigenomics
RummaGEOhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/RummaGEO
RummaGEOhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/RummaGEO
SILAC Phosphoproteomicshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/SILAC%20Phosphoproteomics
SILAC Phosphoproteomicshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/SILAC%20Phosphoproteomics
Sanger DepMap/Cancer Cell Line Proteomicshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Sanger%20DepMap/Cancer%20Cell%20Line%20Proteomics
Sanger DepMap/Cancer Cell Line Proteomicshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Sanger%20DepMap/Cancer%20Cell%20Line%20Proteomics
Sci-Plex/sciRNA-seq Drug Perturbation Signatureshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Sci-Plex/sciRNA-seq%20Drug%20Perturbation%20Signatures
Sci-Plex/sciRNA-seq Drug Perturbation Signatureshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Sci-Plex/sciRNA-seq%20Drug%20Perturbation%20Signatures
SubCellBarcodehttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/SubCellBarcode
SubCellBarcodehttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/SubCellBarcode
SynGO/Synaptic Gene Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/SynGO/Synaptic%20Gene%20Annotations
SynGO/Synaptic Gene Annotationshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/SynGO/Synaptic%20Gene%20Annotations
TCGAhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TCGA
TCGAhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TCGA
TG-GATEshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TG-GATEs
TG-GATEshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TG-GATEs
TISSUEShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TISSUES
TISSUEShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TISSUES
Tabula Sapienshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Tabula%20Sapiens
Tabula Sapienshttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Tabula%20Sapiens
Tahoe Therapeutics/Tahoe 100M Perturbation Atlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Tahoe%20Therapeutics/Tahoe%20100M%20Perturbation%20Atlas
Tahoe Therapeutics/Tahoe 100M Perturbation Atlashttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Tahoe%20Therapeutics/Tahoe%20100M%20Perturbation%20Atlas
TargetScanHumanhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TargetScanHuman
TargetScanHumanhttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/TargetScanHuman
UKBioBankGWAShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/UKBioBankGWAS
UKBioBankGWAShttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/UKBioBankGWAS
READMEhttps://github.com/MaayanLab/HarmonizomePythonScripts
https://github.com/MaayanLab/HarmonizomePythonScripts#harmonizomepythonscripts
Utility Functions File https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/utility_functions.py
https://github.com/MaayanLab/HarmonizomePythonScripts#the-file-containing-all-utility-functions-that-are-required-to-run-the-scripts-can-be-found-here--utility-functions-file-
Gene Symbol Mapping File https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/mappingFile_2017.txt
https://github.com/MaayanLab/HarmonizomePythonScripts#the-file-containing-the-gene-symbol-mapping-mapping-all-gene-symbols-to-up-to-date-human-symbols-can-be-found-here--gene-symbol-mapping-file-
Gene ID to Symbol Mapping File https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GeneSymbolAndIDS_2017.txt
https://github.com/MaayanLab/HarmonizomePythonScripts#the-file-containing-the-gene-id-to-symbol-mappings-can-be-found-here--gene-id-to-symbol-mapping-file-
ARCHS4https://amp.pharm.mssm.edu/archs4/
ARCHS4 HCL Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Cell%20Lines/ARCHS4%20(Human%20Cell%20Lines).ipynb
ARCHS4https://amp.pharm.mssm.edu/archs4/
ARCHS4 HT Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Tissue/ARCHS4%20(Human%20Tissue).ipynb
ARCHS4https://amp.pharm.mssm.edu/archs4/
ARCHS4 HK Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Kinase/ARCHS4%20(Kinases).ipynb
ARCHS4https://amp.pharm.mssm.edu/archs4/
ARCHS4 HTF Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Trasncription%20Factors/ARCHS4%20(Transcription%20Factors).ipynb
ARCHS4https://amp.pharm.mssm.edu/archs4/
ARCHS4 IDG Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20IDG%20Focused%20Genes/ARCHS4%20(IDG).ipynb
Achilleshttps://portals.broadinstitute.org/achilles
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Achilles+Cell+Line+Gene+Essentiality+Profiles
Achilles Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Achilles/Cell%20Line%20Gene%20Essentiality%20Profiles/Achilles.ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-AHB-RS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Adult%20Human%20Brain%20(RNA-Sequencing)/Allen%20Brain%20Atlas%20Adult%20Human%20Brain%20(RNA-Sequencing).ipynb
Allen Brain Atlashttps://www.brain-map.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Allen+Brain+Atlas+Adult+Human+Brain+Tissue+Gene+Expression+Profiles
ABA-AHB-MA Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Adult%20Human%20Brain%20(microarray)/Allen%20Brain%20Atlas%20Adult%20Human%20Brain%20(microarray).ipynb
Allen Brain Atlashttps://www.brain-map.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Allen+Brain+Atlas+Adult+Mouse+Brain+Tissue+Gene+Expression+Profiles
ABA-AMB-RS Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Adult%20Mouse%20Brain%20Tissue%20Gene%20Expression%20Profiles/abamouseprocess.m
Allen Brain Atlashttps://www.brain-map.org/
ABA-AB-D-TBI Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Aging%20Human%20Brain%20(RNA-Sequencing)/Dementia%20TBI%20-%20Tissue/Allen%20Brain%20Atlas%20Aging%20Human%20Brain%20Tissue-Demetia-TBI%20(RNA-Seq).ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-AB-NS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Aging%20Human%20Brain%20(RNA-Sequencing)/No%20Disease%20-%20Tissue%20Age/Allen%20Brain%20Atlas%20Aging%20Human%20Brain%20No%20Disease%20-%20Tissue%20Age%20(RNA-Seq).ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-DB-RS-A Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(RNA-Sequencing)/Age/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Age%20(RNA-Seq).ipynb
Allen Brain Atlashttps://www.brain-map.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Allen+Brain+Atlas+Developing+Human+Brain+Tissue+Gene+Expression+Profiles+by+RNA-seq
ABA-DB-RS-S Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(RNA-Sequencing)/Sample/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Sample%20(RNA-Seq).ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-DB-RS-T Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(RNA-Sequencing)/Tissue/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Tissue%20(RNA-Seq).ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-DB-MA-A Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(microarray)/Age/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Age%20(microarray).ipynb
Allen Brain Atlashttps://www.brain-map.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Allen+Brain+Atlas+Developing+Human+Brain+Tissue+Gene+Expression+Profiles+by+Microarray
ABA-DB-MA-S Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(microarray)/Sample/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Sample%20(microarray).ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-DB-MA-T Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(microarray)/Tissue/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Tissue%20(microarray).ipynb
Allen Brain Atlashttps://www.brain-map.org/
ABA-P-S Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Prenatal%20Human%20Brain%20(microarray)/Sample/Allen%20Brain%20Atlas%20Prenatal%20Human%20Brain%20Sample%20(RNA-Seq).ipynb
Allen Brain Atlashttps://www.brain-map.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Allen+Brain+Atlas+Prenatal+Human+Brain+Tissue+Gene+Expression+Profiles
ABA-P-T Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Prenatal%20Human%20Brain%20(microarray)/Tissue/Allen%20Brain%20Atlas%20Prenatal%20Human%20Brain%20Tissue%20(RNA-Seq).ipynb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Biocarta+Pathways
Biocarta Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Biocarta/Pathways/Biocartaprocess.m
BioGPShttp://biogps.org/#goto=welcome
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/BioGPS+Cell+Line+Gene+Expression+Profiles
BGPS-CL Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioGPS/Cell%20Line%20Gene%20Expression%20Profiles/BioGPS%20(Human%20Cell%20Line).ipynb
BioGPShttp://biogps.org/#goto=welcome
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/BioGPS+Human+Cell+Type+and+Tissue+Gene+Expression+Profiles
BGPS-HT Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioGPS/Human%20Cell%20Type%20and%20Tissue%20Gene%20Expression%20Profiles/BioGPS%20(Human%20Tissue%20and%20Cell%20Type).ipynb
BioGPShttp://biogps.org/#goto=welcome
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/BioGPS+Mouse+Cell+Type+and+Tissue+Gene+Expression+Profiles
BGPS-MT Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master
BioPlanethttps://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_1054&target=pathway
BioPlanet Scriptshttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioPlanet/BioPlanet.ipynb
BioPlexhttp://bioplex.hms.harvard.edu/
BPLX Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioPlex/BioPlex.ipynb
bgeehttps://bgee.org/
BHS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Human/bgee%20Human%20Sample.ipynb
bgeehttps://bgee.org/
BHDS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Human/bgee%20Human%20Developmental%20Stage.ipynb
bgeehttps://bgee.org/
BHAE Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Human/bgee%20Human%20Anatomical%20Entity.ipynb
bgeehttps://bgee.org/
BMS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Mouse/bgee%20Mouse%20Sample.ipynb
bgeehttps://bgee.org/
BMDS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Mouse/bgee%20Mouse%20Developmental%20Stage.ipynb
bgeehttps://bgee.org/
BMAE Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Mouse/bgee%20Mouse%20Anatomical%20Entity.ipynb
bgeehttps://bgee.org/
BRS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Rat/bgee%20Rat%20Sample.ipynb
bgeehttps://bgee.org/
BRDS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Rat/bgee%20Rat%20Developmental%20Stage.ipynb
bgeehttps://bgee.org/
BRAE Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Rat/bgee%20Rat%20Anatomical%20Entity.ipynb
CCLEhttps://portals.broadinstitute.org/ccle
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CCLE+Cell+Line+Gene+CNV+Profiles
CCLE CNV Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CCLE/Cell%20Line%20Gene%20CNV%20Profiles/CCLECNVprocess.m
CCLEhttps://portals.broadinstitute.org/ccle
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CCLE+Cell+Line+Gene+Expression+Profiles
CCLE Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CCLE/Cell%20Line%20Gene%20Expression%20Profiles/Cancer%20Cell%20Line%20Encyclopedia%20(CCLE).ipynb
CCLEhttps://portals.broadinstitute.org/ccle
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CCLE+Cell+Line+Gene+Mutation+Profiles
CCLE Mut Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CCLE/Cell%20Line%20Gene%20Mutation%20Profiles/CCLEMutprocess.m
CCLEhttps://portals.broadinstitute.org/ccle
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CCLE+Cell+Line+Proteomics
CCLE Prot Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CCLE/Cell%20Line%20Proteomics/CCLEProteomics.ipynb
CellMarkerhttp://bio-bigdata.hrbmu.edu.cn/CellMarker/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CellMarker+Gene-Cell+Type+Associations
CellMarker Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CellMarker/Gene-Cell%20Type%20Associations/CellMarker.ipynb
ChEAhttps://maayanlab.cloud/chea3/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ChEA+Transcription+Factor+Binding+Site+Profiles
ChEA 14 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ChEA/Transcription%20Factor%20Targets/2014/ChEATFBSPprocess.m
ChEAhttps://maayanlab.cloud/chea3/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ChEA+Transcription+Factor+Targets
ChEA 15 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ChEA/Transcription%20Factor%20Targets/2015/ChEAPPIprocess.m
ChEAhttps://maayanlab.cloud/chea3/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ChEA+Transcription+Factor+Targets+2022
ChEA 22 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ChEA/Transcription%20Factor%20Targets/2022/ChEA2022.ipynb
Chip Atlashttp://chip-atlas.org/
CHPATLS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Chip%20Atlas/Chip_Atlas.ipynb
ClinVarhttps://www.ncbi.nlm.nih.gov/clinvar/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ClinVar+Gene-Phenotype+Associations
ClinVar Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ClinVar/Gene-Phenotype%20Associations/ClinVar.ipynb
CMAPhttps://portals.broadinstitute.org/cmap/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CMAP+Signatures+of+Differentially+Expressed+Genes+for+Small+Molecules
CMAP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/cmap/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Small%20Molecules/cmap.ipynb
CORUMhttp://mips.helmholtz-muenchen.de/corum/#
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CORUM+Protein+Complexes
CORUM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CORUM/Protein%20Complexes/CORUM.ipynb
CTDhttp://ctdbase.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CTD+Gene-Chemical+Interactions
CTD-GCI Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CTD/Gene-Chemical%20Interactions/CTD%20(Gene%20Chemical%20Interactions).ipynb
CTDhttp://ctdbase.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/CTD+Gene-Disease+Associations
CTD-GDI Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CTD/Gene-Disease%20Interactions/CTD%20(Gene%20Disease%20Interactions).ipynb
dbGAPhttps://www.ncbi.nlm.nih.gov/gap
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/dbGAP+Gene-Trait+Associations
dbGAP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/dbGAP/Gene-Trait%20Associations/dbGAP.ipynb
DeepCoverMOAhttps://wren.hms.harvard.edu/DeepCoverMOA/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DeepCoverMOA+Drug+Mechanisms+of+Action
DeepCoverMOA Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DeepCoverMOA/Drug%20Mechanisms%20of%20Action/DeepCoverMOA.ipynb
DepMaphttps://depmap.org/portal/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DepMap+CRISPR+Gene+Dependency
DepMap CRISPR Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DepMap/CRISPR%20Gene%20Dependency/DepMapCRISPRGeneDependency.ipynb
DEPODhttps://depod.bioss.uni-freiburg.de/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DEPOD+Substrates+of+Phosphatases
DEPOD Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DEPOD/Substrates%20of%20Phosphatases/DEPODprocess.m
DisGeNEThttps://disgenet.com/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DisGeNET+Gene-Disease+Associations
DisGeNET D Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DisGeNET/Gene-Disease%20Associations/DisGeNETdiseases.ipynb
DisGeNEThttps://disgenet.com/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DisGeNET+Gene-Phenotype+Associations
DisGeNET P Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DisGeNET/Gene-Phenotype%20Associations/DisGeNETphenotypes.ipynb
Drugbankhttps://www.drugbank.ca/
DRGBNK-DC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Carrier.ipynb
Drugbankhttps://www.drugbank.ca/
DRGBNK-DE Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Enzyme.ipynb
Drugbankhttps://www.drugbank.ca/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DrugBank+Drug+Targets
DRGBNK-DT Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drug%20Targets/Drugbank-Drug%20Target.ipynb
Drugbankhttps://www.drugbank.ca/
DRGBNK-DTRS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Transporter.ipynb
DSigDBhttp://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/
DSigDB-CDS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20Computational%20Drug%20Signatures.ipynb
DSigDBhttp://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/
DSigDB-FAD Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20FDA%20Approved%20Drugs.ipynb
DSigDBhttp://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/
DSigDB-KI Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20Kinase%20Inhibitors.ipynb
DSigDBhttp://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/
DSigDB-PS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20Perturbagen%20Signatures.ipynb
ENCODEhttps://www.encodeproject.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ENCODE+Histone+Modification+Site+Profiles
ENCODE-HM SCripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Encode/Histone%20Modification%20Site%20Profiles/ENCODEhmprocess.m
ENCODEhttps://www.encodeproject.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ENCODE+Transcription+Factor+Targets
ENCODE-TF Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Encode/Transcription%20Factor%20Targets/ENCODE%20(Transcription%20Factors).ipynb
ENCODEhttps://www.encodeproject.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ENCODE+Transcription+Factor+Binding+Site+Profiles
ENCODE-TF-BS Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Encode/Transcription%20Factor%20Binding%20Site%20Profiles/ENCODE%20(Transcription%20Factors%20-%20Binding%20Sites).ipynb
ESCAPEhttp://www.maayanlab.net/ESCAPE/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ESCAPE+Omics+Signatures+of+Genes+and+Proteins+for+Stem+Cells
ESCAPE Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ESCAPE/Omics%20Signatures%20of%20Genes%20and%20Proteins%20for%20Stem%20Cells/ESCAPE%20(gene%20target).ipynb
GADhttps://geneticassociationdb.nih.gov/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GAD+Gene-Disease+Associations
GAD Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GAD/Gene-Disease%20Associations/GAD%20(Gene-Disease%20Associations).ipynb
GADhttps://geneticassociationdb.nih.gov/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GAD+High+Level+Gene-Disease+Associations
HL-GAD Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GAD/High%20Level%20Gene-Disease%20Associations
GDSChttps://www.cancerrxgene.org/
Harmonizomehttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master
GDSC Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GDSC/GDSC.ipynb
GeneRIFhttps://www.ncbi.nlm.nih.gov/gene/about-generif
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GeneRIF+Biological+Term+Annotations
GeneRIF Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GeneRIF/Biological%20Term%20Annotations/GeneRIF.ipynb
GeneSigDBhttps://www.genesigdb.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GeneSigDB+Published+Gene+Signatures
GeneSigDB Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GeneSigDB/Published%20Gene%20Signatures/GeneSigDB.ipynb
GEOhttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Diseases
GEO Disease Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GEO/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Diseases/GEOdiseaseprocess.m
GEOhttps://www.ncbi.nlm.nih.gov/geo/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Gene+Perturbations
GEO Gene Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GEO/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Gene%20Perturbations/GEOgeneprocess.m
GEOhttps://www.ncbi.nlm.nih.gov/geo/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Kinase+Perturbations
GEO Kinase Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GEO/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Kinase%20Perturbations/GEOkinaseprocess.m
GEOhttps://www.ncbi.nlm.nih.gov/geo/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Small+Molecules
GEO SM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GEO/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Small%20Molecules/GEOchemicalprocess.m
GEOhttps://www.ncbi.nlm.nih.gov/geo/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Transcription+Factor+Perturbations
GEO TF SCripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GEO/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Transcription%20Factor%20Perturbations/GEOtfprocess.m
GEOhttps://www.ncbi.nlm.nih.gov/geo/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Viral+Infections
GEO Virus Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GEO/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Viral%20Infections/GEOvirusprocess.m
GlyGenhttps://glygen.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GlyGen+Glycosylated+Proteins
GlyGen Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GlyGen/Glycosylated%20Proteins/GlyGen.ipynb
GOhttp://www.geneontology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GO+Biological+Process+Annotations+2015
GO-BP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Biological%20Processes/2015/Gene%20Ontology%20(GO)%20Biological%20Process.ipynb
GOhttp://www.geneontology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GO+Biological+Process+Annotations+2023
GO-BP-23 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Biological%20Processes/2023/GOBiologicalProcesses23.ipynb
GOhttp://www.geneontology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GO+Cellular+Component+Annotations+2015
GO-CC Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Cellular%20Components/2015/Gene%20Ontology%20(GO)%20Cellular%20Component.ipynb
GOhttp://www.geneontology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GO+Cellular+Component+Annotations+2023
GO-CC-23 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Cellular%20Components/2023/GOCellularComponents23.ipynb
GOhttp://www.geneontology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GO+Molecular+Function+Annotations+2015
GO-MF Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Molecular%20Functions/2015/Gene%20Ontology%20(GO)%20Molecular%20Function.ipynb
GOhttp://www.geneontology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GO+Molecular+Function+Annotations+2023
GO-MF-23 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Molecular%20Functions/2023/GOMolecularFunctions23.ipynb
GTExhttps://www.gtexportal.org/home/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GTEx+eQTL
GTEx eQTL Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GTEx/eQTL/GTExeQTLprocess.m
GTExhttps://www.gtexportal.org/home/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GTEx+Tissue+Sample+Gene+Expression+Profiles
GTEx Sample Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GTEx/Sample/GTEx%20Sample.ipynb
GTExhttps://www.gtexportal.org/home/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GTEx+Tissue+Gene+Expression+Profiles
GTEx Tissue Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GTEx/Tissue%20Gene%20Expression%20Profiles/2015/GTEx%20Tissue.ipynb
GTExhttps://www.gtexportal.org/home/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GTEx+Tissue+Gene+Expression+Profiles+2023
GTEx Tissue 23 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GTEx/Tissue%20Gene%20Expression%20Profiles/2023/GTExTissue.ipynb
GTExhttps://www.gtexportal.org/home/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GTEx+Tissue-Specific+Aging+Signatures
GTEx AS Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GTEx/Tissue-Specific%20Aging%20Signatures/GTExAgingSignatures.ipynb
Guide to Pharmacologyhttp://www.guidetopharmacology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Guide+to+Pharmacology+Chemical+Ligands+of+Receptors
GTP-CLR Tissue Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Guide%20to%20Pharmacology/Chemical%20Ligands%20of%20Receptors/Guide%20to%20Pharmacology%20(Chemical%20Ligands%20of%20Receptors).ipynb
Guide to Pharmacologyhttp://www.guidetopharmacology.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Guide+to+Pharmacology+Protein+Ligands+of+Receptors
GTP-PLR Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Guide%20to%20Pharmacology/Protein%20Ligands%20of%20Receptors/Guide%20to%20Pharmacology%20(Protein%20Ligands%20of%20Receptors).ipynb
GWAS Cataloghttps://www.ebi.ac.uk/gwas/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GWAS+Catalog+SNP-Phenotype+Associations
GWAS Catalog Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GWAS%20Catalog/SNP-Phenotype%20Associations/GWAS%20Catalog.ipynb
GWASdbhttp://jjwanglab.org/gwasdb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GWASdb+SNP-Disease+Associations
GWASdb Disease Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GWASdb/SNP-Disease%20Associations/GWASdb-Disease.ipynb
GWASdbhttp://jjwanglab.org/gwasdb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/GWASdb+SNP-Phenotype+Associations
GWASdb Phenotype Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GWASdb/SNP-Phenotype%20Associations/GWASdb-Phenotype.ipynb
Heiser et al., PNAS, 2011https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-181
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Heiser+et+al.,+PNAS,+2011+Cell+Line+Gene+Expression+Profiles
Heiser Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Heiser%20et%20al./Cell%20Line%20Gene%20Expression%20Profiles/Heiserprocess.m
HMDBhttp://www.hmdb.ca/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HMDB+Metabolites+of+Enzymes
HMDB Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HMDB/Metabolites%20of%20Enzymes/2015/HMDB.ipynb
HPAhttps://www.proteinatlas.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HPA+Cell+Line+Gene+Expression+Profiles
HPA CL Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HPA/Cell%20Line%20Gene%20Expression%20Profiles/The%20Human%20Protein%20Atlas%20(THPA)%20Celline%20(RNA-seq).ipynb
HPAhttps://www.proteinatlas.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HPA+Tissue+Gene+Expression+Profiles
HPA TG Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HPA/Tissue%20Gene%20Expression%20Profiles/HPAtissuesmrnaprocess.m
HPAhttps://www.proteinatlas.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HPA+Tissue+Protein+Expression+Profiles
HPA TP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HPA/Tissue%20Protein%20Expression%20Profiles/HPAtissuesproteinprocess.m
HPAhttps://www.proteinatlas.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HPA+Tissue+Sample+Gene+Expression+Profiles
HPA TS SCripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HPA/Tissue%20Sample%20Gene%20Expression%20Profiles/HPAsamplesprocess.m
HPMhttp://www.humanproteomemap.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HPM+Cell+Type+and+Tissue+Protein+Expression+Profiles
HPM SCripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HPM/Cell%20Type%20and%20Tissue%20Protein%20Expression%20Profiles/HPMprocess.m
hu.MAPhttp://proteincomplexes.org/
hu.MAP Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/hu.MAP/hu.MAP.ipynb
HPOhttps://hpo.jax.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HPO+Gene-Disease+Associations
HPO Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HPO/Gene-Disease%20Associations/Human%20Phenotype%20Ontology.ipynb
Hub Proteinshttps://maayanlab.cloud/X2K/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Hub+Proteins+Protein-Protein+Interactions
Hub Proteins Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Hub%20Proteins/Protein-Protein%20Interactions/hubsprocess.m
HuBMAPhttps://hubmapconsortium.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HuBMAP+ASCT$plus$B+Annotations
ASCT+B Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HuBMAP/ASCT%2BB/hubmapasctb.ipynb
HuBMAPhttps://hubmapconsortium.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HuBMAP+Azimuth+Cell+Type+Annotations
Azimuth Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HuBMAP/Asimuth%20Cell%20Type%20Annotations/HuBMAPAzimuth.ipynb
HuGE Navigatorhttps://phgkb.cdc.gov/PHGKB/hNHome.action
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HuGE+Navigator+Gene-Phenotype+Associations
HuGE Navigator Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HuGE%20Navigator/Gene-Phenotype%20Associations/HuGENavigatorprocess.m
HumanCychttps://humancyc.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/HumanCyc+Pathways
HumanCyc Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/HumanCyc/Pathways/HumanCycprocess.m
IMPChttps://www.mousephenotype.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/IMPC+Knockout+Mouse+Phenotypes
KOMP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/IMPC/Knockout%20Mouse%20Phenotypes/KOMP.ipynb
InterProhttps://www.ebi.ac.uk/interpro/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/InterPro+Predicted+Protein+Domain+Annotations
InterPro Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/InterPro/Predicted%20Protein%20Domain%20Annotations/InterProprocess.m
Jasparhttps://jaspar.elixir.no/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/JASPAR+Predicted+Transcription+Factor+Targets
Jaspar Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Jaspar%20PWMs/Predicted%20Transcription%20Factor%20Targets/JasparPWMsprocess.m
Jensen Lab COMPARRTMENTShttps://compartments.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/COMPARTMENTS+Curated+Protein+Localization+Evidence+Scores
JL-C-CU Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/COMPARTMENTS/Curated%20Protein%20Localization%20Evidence%20Scores/COMPARTMENTScuratedprocess.m
Jensen Lab COMPARRTMENTShttps://compartments.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/COMPARTMENTS+Experimental+Protein+Localization+Evidence+Scores
JL-C-EX Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/COMPARTMENTS/Experimental%20Protein%20Localization%20Evidence%20Scores/COMPARTMENTSexptsprocess.m
Jensen Lab COMPARRTMENTShttps://compartments.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/COMPARTMENTS+Text-mining+Protein+Localization+Evidence+Scores
JL-C-TM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/COMPARTMENTS/Text-mining%20Protein%20Localization%20Evidence%20Scores/COMPARTMENTStextminingprocess.m
Jensen Lab DISEASEShttps://diseases.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DISEASES+Curated+Gene-Disease+Association+Evidence+Scores
JL-D-CU Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DISEASES/Curated%20Gene-Disease%20Association%20Evidence%20Scores/DISEASEScuratedprocess.m
Jensen Lab DISEASEShttps://diseases.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DISEASES+Experimental+Gene-Disease+Association+Evidence+Scores
JL-D-EX Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DISEASES/Experimental%20Gene-Disease%20Association%20Evidence%20Scores/DISEASESexptsprocess.m
Jensen Lab DISEASEShttps://diseases.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/DISEASES+Text-mining+Gene-Disease+Association+Evidence+Scores
JL-D-TM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DISEASES/Text-mining%20Gene-Disease%20Association%20Evidence%20Scores/DISEASEStextminingprocess.m
Jensen Lab TISSUEShttps://tissues.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/TISSUES+Curated+Tissue+Protein+Expression+Evidence+Scores
JL-T-CU Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TISSUES/Curated%20Tissue%20Protein%20Expression%20Evidence%20Scores/TISSUEScuratedprocess.m
Jensen Lab TISSUEShttps://tissues.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/TISSUES+Experimental+Tissue+Protein+Expression+Evidence+Scores
JL-T-EX Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TISSUES/Experimental%20Tissue%20Protein%20Expression%20Evidence%20Scores/TISSUESexptsprocess.m
Jensen Lab TISSUEShttps://tissues.jensenlab.org/Search
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/TISSUES+Text-mining+Tissue+Protein+Expression+Evidence+Scores
JL-T-TM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TISSUES/Text-mining%20Tissue%20Protein%20Expression%20Evidence%20Scores/TISSUEStextminingprocess.m
KEAhttps://maayanlab.cloud/kea3/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/KEA+Substrates+of+Kinases
KEA Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/KEA/Substrates%20of%20Kinases/KEAprocess.m
KEGGhttps://www.kegg.jp/kegg/download/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/KEGG+Pathways
KEGG Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/KEGG/Pathways/KEGGprocess.m
Kinase Libraryhttps://kinase-library.phosphosite.org/site
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Kinase+Library+Serine+Threonine+Kinome+Atlas
KL-ST Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/KinaseLibrary/Serine%20Threonine%20Kinome%20Atlas/KinaseLibrary.ipynb
Kinase Libraryhttps://kinase-library.phosphosite.org/site
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Kinase+Library+Tyrosine+Kinome+Atlas
KL-T Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/KinaseLibrary/Tyrosine%20Kinome%20Atlas/TyrosineKinome.ipynb
Klijn et al. Nat. Biotechnol. 2015https://www.nature.com/articles/nbt.3080
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Klijn+et+al.,+Nat.+Biotechnol.,+2015+Cell+Line+Gene+CNV+Profiles
Klijn CNV Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Klijn%20et%20al./Cell%20Line%20Gene%20CNV%20Profiles/KlijnCNVprocess.m
Klijn et al. Nat. Biotechnol. 2015https://www.nature.com/articles/nbt.3080
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Klijn+et+al.,+Nat.+Biotechnol.,+2015+Cell+Line+Gene+Expression+Profiles
Klijn Expr Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Klijn%20et%20al./Cell%20Line%20Gene%20Expression%20Profiles/KlijnmRNAprocess.m
Klijn et al. Nat. Biotechnol. 2015https://www.nature.com/articles/nbt.3080
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Klijn+et+al.,+Nat.+Biotechnol.,+2015+Cell+Line+Gene+Mutation+Profiles
Klijn Mut Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Klijn%20et%20al./Cell%20Line%20Gene%20Mutation%20Profiles/Klijnmutprocess.m
KnockTFhttps://bio.liclab.net/KnockTFv1/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/KnockTF+Gene+Expression+Profiles+with+Transcription+Factor+Perturbations
KnockTF Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/KnockTF/Gene%20Expression%20Profiles%20with%20Transcription%20Factor%20Perturbations/knockTF.ipynb
LINCS Kinativhttps://lincs.hms.harvard.edu/about/approach/assays/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LINCS+Kinativ+Kinase+Inhibitor+Bioactivity+Profiles
Kinativ Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LINCS%20Kinativ/Kinase%20Inhibition%20Bioactivity%20Profiles/kinativprocess.m
LINCS KinomeScanhttps://lincs.hms.harvard.edu/kinomescan/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LINCS+KinomeScan+Kinase+Inhibitor+Targets
KinomeScan Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LINCS%20KinomeScan/Kinase%20Inhibitor%20Targets/KinomeScanprocess.m
LINCS L1000 CMAPhttps://clue.io/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LINCS+L1000+CMAP+Signatures+of+Differentially+Expressed+Genes+for+Small+Molecules
L1000 Chem Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LINCS%20L1000%20CMap/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Small%20Molecules/L1000chemicalprocess.m
LINCS L1000 CMAPhttps://maayanlab.cloud/sigcom-lincs/#/Download
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LINCS+L1000+CMAP+CRISPR+Knockout+Consensus+Signatures
L1000 CRISPR CS Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LINCS%20L1000%20CMap/CRISPR%20Knockout%20Consensus%20Signatures/LINCSL1000CRISPRKO.ipynb
LINCS L1000 CMAPhttps://maayanlab.cloud/sigcom-lincs/#/Download
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LINCS+L1000+CMAP+Chemical+Perturbation+Consensus+Signatures
L1000 Chem CS Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LINCS%20L1000%20CMap/Chemical%20Perturbations%20Consensus%20Signatures/L1000ChemPert.ipynb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LOCATE+Curated+Protein+Localization+Annotations
LOCATE Cur Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LOCATE/Curated%20Protein%20Localization%20Annotations/locateprocess.m
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/LOCATE+Predicted+Protein+Localization+Annotations
LOCATE Pred Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/LOCATE/Predicted%20Protein%20Localization%20Annotations/locatepredictedprocess.m
MGIhttp://www.informatics.jax.org/function.shtml
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MPO+Gene-Phenotype+Associations
MGI 15 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MGI/Mouse%20Phenotype%20Associations/2015/Mouse%20Gene%20Ontology%20(MGI).ipynb
MGIhttp://www.informatics.jax.org/function.shtml
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MGI+Mouse+Phenotype+Associations+2023
MGI 23 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MGI/Mouse%20Phenotype%20Associations/2023/MGIMousePhenotype.ipynb
miRTarBasehttp://mirtarbase.mbc.nctu.edu.tw/php/index.php
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MiRTarBase+microRNA+Targets
miRTarBase Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/miRTarBase/miRTarBase.ipynb
MotifMaphttps://motifmap-rna.ics.uci.edu/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MotifMap+Predicted+Transcription+Factor+Targets
MotifMap Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MotifMap/Predicted%20Transcription%20Factor%20Targets/motifmapprocess.m
MoTrPAChttps://www.motrpac.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MoTrPAC+Rat+Endurance+Exercise+Training
MoTrPAC Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MoTrPAC/Rat%20Endurance%20Exercise%20Training/MoTrPAC.ipynb
MSigDBhttps://www.gsea-msigdb.org/gsea/msigdb/collections.jsp
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MSigDB+Cancer+Gene+Co-expression+Modules
MSigDB COMP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MSigDB/Cancer%20Gene%20Co-expressed%20Modules/msigdbcompprocess.m
MSigDBhttps://www.gsea-msigdb.org/gsea/msigdb/collections.jsp
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MSigDB+Signatures+of+Differentially+Expressed+Genes+for+Cancer+Gene+Perturbations
MSigDB GP Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MSigDB/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Cancer%20Gene%20Perturbations/msigdboncprocess.m
MWhttps://www.metabolomicsworkbench.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/MW+Enzyme+Metabolite+Associations
MW Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MW/Enzyme%20Metabolite%20Associations/MWMetabolites.ipynb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/NURSA+Protein-Protein+Interactions
NURSA PPI Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/NURSA/Protein-Protein%20Interactions/NURSAPPIprocess.m
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/NURSA+Protein+Complexes
NURSA Complex Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/NURSA/Protein%20Complexes/NURSAprocess.m
OMIMhttps://www.omim.org/downloads/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/OMIM+Gene-Disease+Associations
OMIM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/OMIM/Gene-Disease%20Associations/OMIMprocess.m
PANTHERhttps://pantherdb.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/PANTHER+Pathways
PANTHER Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PANTHER/Pathways/PANTHERprocess.m
Pathway Commonshttps://www.pathwaycommons.org/
Harmonizomehttps://www.google.com/url?q=https://maayanlab.cloud/Harmonizome/dataset/Pathway%2BCommons%2BProtein-Protein%2BInteractions&sa=D&source=editors&ust=1735848032736977&usg=AOvVaw0o2xp1WgKHMIWHe6C5tjQl
PCPPI Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Pathway%20Commons/Pathway%20Commons%20Protein-Protein%20Interactions.ipynb
Pathway Commonshttps://www.pathwaycommons.org/
PCP Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Pathway%20Commons/Pathway%20Commons%20Pathways.ipynb
PFOCRhttps://pfocr.wikipathways.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/PFOCR+Pathway+Figure+Associations+2023
PFOCR 23 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PFOCR/Pathway%20Figure%20Associations/2023/PFOCR.ipynb
PFOCRhttps://pfocr.wikipathways.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/PFOCR+Pathway+Figure+Associations+2024
PFOCR 24 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PFOCR/Pathway%20Figure%20Associations/2024/PFOCR24.ipynb
PheWebhttp://pheweb.sph.umich.edu/
PheWeb Scriptshttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PheWeb/PheWeb.ipynb
Phosphosite Textmininghttps://www.phosphosite.org/homeAction.action
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Phosphosite+Textmining+Biological+Term+Annotations
Phosphosite TM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Phosphosite%20Textmining/Biological%20Term%20Annotations/PhosphositeTextminingprocess.m
PhosphoSitePlushttps://www.phosphosite.org/homeAction.action
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/PhosphoSitePlus+Substrates+of+Kinases
PSP Kinase Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PhosphoSitePlus/Substrates%20of%20Kinases/PhosphoSitePlusprocess.m
PhosphoSitePlushttps://www.phosphosite.org/homeAction.action
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/PhosphoSitePlus+Phosphosite-Disease+Associations
PSP Disease Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PhosphoSitePlus/Phosphosite-Disease%20Associations/PhosphositePlusdiseaseprocess.m
PIDhttps://github.com/NCIP/pathway-interaction-database/tree/master/download
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/PID+Pathways
PID Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PID/Pathways/PIDprocess.m
ProteomicsDBhttps://www.proteomicsdb.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/ProteomicsDB+Cell+Type+and+Tissue+Protein+Expression+Profiles
Proteomics DB Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ProteomicsDB/Cell%20Type%20and%20Tissue%20Protein%20Expression%20Profiles/ProteomicsDBprocess.m
Reactomehttps://reactome.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Reactome+Pathways+2014
Reactome 14 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Reactome/Pathways/2014/Reactome.ipynb
Reactomehttps://reactome.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Reactome+Pathways+2024
Reactome 24 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Reactome/Pathways/2024/ReactomePathways24.ipynb
Roadmap Epigenomicshttp://www.roadmapepigenomics.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Roadmap+Epigenomics+Cell+and+Tissue+DNA+Methylation+Profiles
Roadmap DNA Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Cell%20and%20Tissue%20DNA%20Methylation%20Profiles/RoadmapEpigenomicsDNAMethylationprocess.m
Roadmap Epigenomicshttp://www.roadmapepigenomics.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Roadmap+Epigenomics+Cell+and+Tissue+Gene+Expression+Profiles
Roadmap Epigenomics Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Cell%20and%20Tissue%20Gene%20Expression%20Profiles/Roadmap%20Epigenomics%20(Cell%20and%20Tissue%20Expression).ipynb
Roadmap Epigenomicshttp://www.roadmapepigenomics.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Roadmap+Epigenomics+Histone+Modification+Site+Profiles
Roadmap HM Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Histone%20Modification%20Site%20Profiles/RoadmapEpigenomicsHistoneModificationprocess.m
Sanger Dependency Maphttps://depmap.sanger.ac.uk/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Sanger+Dependency+Map+Cancer+Cell+Line+Proteomics
Sanger Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Sanger%20DepMap/Cancer%20Cell%20Line%20Proteomics/SangerProteomics.ipynb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/SILAC+Phosphoproteomics+Signatures+of+Differentially+Phosphorylated+Proteins+for+Drugs
SILAC Drug Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/SILAC%20Phosphoproteomics/Signatures%20of%20Differentially%20Phosphorylated%20Proteins%20for%20Drugs/SILACdrugprocess.m
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/SILAC+Phosphoproteomics+Signatures+of+Differentially+Phosphorylated+Proteins+for+Gene+Perturbations
SILAC Gene Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/SILAC%20Phosphoproteomics/Signatures%20of%20Differentially%20Phosphorylated%20Proteins%20for%20Gene%20Perturbations/SILACgeneprocess.m
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/SILAC+Phosphoproteomics+Signatures+of+Differentially+Phosphorylated+Proteins+for+Protein+Ligands
SILAC Protein Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/SILAC%20Phosphoproteomics/Signatures%20of%20Differentially%20Phosphorylated%20Proteins%20for%20Protein%20Ligands/SILACligandprocess.m
SynGOhttps://www.syngoportal.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/SynGO+Synaptic+Gene+Annotations
SynGO Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/SynGO/Synaptic%20Gene%20Annotations/SynGO.ipynb
Tabula Sapienshttps://tabula-sapiens.sf.czbiohub.org/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Tabula+Sapiens+Gene-Cell+Associations
Tabula Sapiens Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Tabula%20Sapiens/Gene-Cell%20Associations/TabulaSapiens.ipynb
TargetScanhttp://www.targetscan.org/vert_72/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/TargetScan+Predicted+Conserved+microRNA+Targets
TargetScanHuman Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Cell%20and%20Tissue%20Gene%20Expression%20Profiles/Roadmap%20Epigenomics%20(Cell%20and%20Tissue%20Expression).ipynb
TargetScanhttp://www.targetscan.org/vert_72/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/TargetScan+Predicted+Nonconserved+microRNA+Targets
TargetScanHuman Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Cell%20and%20Tissue%20Gene%20Expression%20Profiles/Roadmap%20Epigenomics%20(Cell%20and%20Tissue%20Expression).ipynb
TCGAhttps://cancergenome.nih.gov/
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/TCGA+Signatures+of+Differentially+Expressed+Genes+for+Tumors
TCGA Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/Signatures%20of%20Differentially%20Expressed%20Genes%20for%20Tumors/TCGAprocess.m
TCGAhttps://cancergenome.nih.gov/
TCGA-ACC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Adrenocortical%20Carcinoma%20(ACC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-BLCA Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Bladder%20Urothelial%20Carcinoma%20(BLCA).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-LGG Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Brain%20Lower%20Grade%20Glioma%20(LGG).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-BRCA Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Breast%20Invasive%20Carcinoma%20(BRCA).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-CESC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Cervical%20Squamous%20Cell%20Carcinoma%20and%20Endocervical%20Adenocarcinoma%20(CESC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-CHOL Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Cholangiocarcinoma%20(CHOL).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-COAD Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Colon%20Adenocarcinoma%20(COAD).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-ESCA Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Esophageal%20Carcinoma%20(ESCA).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-GBM Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Glioblastoma%20Multiforme%20(GBM).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-HNSC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Head%20and%20Neck%20Squamous%20Cell%20Carcinoma%20(HNSC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-KICH Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Kidney%20Chromophobe%20(KICH).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-KIRC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Kidney%20Renal%20Clear%20Cell%20Carcinoma%20(KIRC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-KIRP Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Kidney%20Renal%20Papillary%20Cell%20Carcinoma%20(KIRP).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-LIHC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Liver%20Hepatocellular%20Carcinoma%20(LIHC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-LUAD Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Lung%20Adenocarcinoma%20(LUAD).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-LUSC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Lung%20Squamous%20Cell%20Carcinoma%20(LUSC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-DLBC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Lymphoid%20Neoplasm%20Diffuse%20Large%20B-cell%20Lymphoma%20(DLBC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-MESO Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Mesothelioma%20(MESO).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-OV Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Ovarian%20Serous%20Cystadenocarcinoma%20(OV).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-PAAD Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Pancreatic%20Adenocarcinoma%20(PAAD).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-PCPG Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Pheochromocytoma%20and%20Paraganglioma%20(PCPG).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-PRAD Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Prostate%20Adenocarcinoma%20(PRAD).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-READ Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Rectum%20Adenocarcinoma%20(READ).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-SARC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Sarcoma%20(SARC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-SKCM Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Skin%20Cutaneous%20Melanoma%20(SKCM).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-STAD Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Stomach%20Adenocarcinoma%20(STAD).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-TGCT Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Testicular%20Germ%20Cell%20Tumors%20(TGCT).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-THYM Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Thymoma%20(THYM).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-THCA Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Thyroid%20Carcinoma%20(THCA).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-UCS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Uterine%20Carcinosarcoma%20(UCS).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-UCEC Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Uterine%20Corpus%20Endometrial%20Carcinoma%20(UCEC).ipynb
TCGAhttps://cancergenome.nih.gov/
TCGA-UVM Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Uveal%20Melanoma%20(UVM).ipynb
The Human Protein Atlashttps://www.proteinatlas.org/
THPA-NT-I Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/The%20Human%20Protaein%20Atlas/The%20Human%20Protein%20Atlas%20(THPA)%20Normal%20Tissue%20(immunohistochemisty).ipynb
UK BioBankhttps://www.ukbiobank.ac.uk/
UKBioBankGWAS Script https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/UKBioBankGWAS/UK%20BioBank%20GWAS%20MedicationCategory-SNP%20Associations.ipynb
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Virus+MINT+Protein-Viral+Protein+Interactions
VM PPI Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Virus%20MINT/Protein-Viral%20Protein%20Interactions/VirusMintPPIprocess.m
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/Virus+MINT+Protein-Virus+Interactions
Virus MINT Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Virus%20MINT/Protein-Virus%20Interactions/VirusMINTprocess.m
WikiPathwayshttps://www.wikipathways.org/index.php/WikiPathways
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/WikiPathways+Pathways+2014
WikiPathways 14 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/WikiPathways/Pathways/2014/WikiPathways.ipynb
WikiPathwayshttps://www.wikipathways.org/index.php/WikiPathways
Harmonizomehttps://maayanlab.cloud/Harmonizome/dataset/WikiPathways+Pathways+2024
WikiPathways 2024 Scripthttps://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/WikiPathways/Pathways/2024/Wikipathways24.ipynb
Readme https://github.com/MaayanLab/HarmonizomePythonScripts#readme-ov-file
Please reload this pagehttps://github.com/MaayanLab/HarmonizomePythonScripts
Activityhttps://github.com/MaayanLab/HarmonizomePythonScripts/activity
Custom propertieshttps://github.com/MaayanLab/HarmonizomePythonScripts/custom-properties
26 starshttps://github.com/MaayanLab/HarmonizomePythonScripts/stargazers
16 watchinghttps://github.com/MaayanLab/HarmonizomePythonScripts/watchers
10 forkshttps://github.com/MaayanLab/HarmonizomePythonScripts/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FMaayanLab%2FHarmonizomePythonScripts&report=MaayanLab+%28user%29
Releaseshttps://github.com/MaayanLab/HarmonizomePythonScripts/releases
Packages 0https://github.com/orgs/MaayanLab/packages?repo_name=HarmonizomePythonScripts
Please reload this pagehttps://github.com/MaayanLab/HarmonizomePythonScripts
Contributors 10https://github.com/MaayanLab/HarmonizomePythonScripts/graphs/contributors
Please reload this pagehttps://github.com/MaayanLab/HarmonizomePythonScripts
Jupyter Notebook 99.1% https://github.com/MaayanLab/HarmonizomePythonScripts/search?l=jupyter-notebook
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

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