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Title: GitHub - MLDataAnalytics/pNet: pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI data.

Open Graph Title: GitHub - MLDataAnalytics/pNet: pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI data.

X Title: GitHub - MLDataAnalytics/pNet: pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI data.

Description: pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI data. - MLDataAnalytics/pNet

Open Graph Description: pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI dat...

X Description: pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI dat...

Opengraph URL: https://github.com/MLDataAnalytics/pNet

X: @github

direct link

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Links:

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210 Commits	https://github.com/MLDataAnalytics/pNet/commits/main/
	https://github.com/MLDataAnalytics/pNet/commits/main/
Hierarchical-FNs	https://github.com/MLDataAnalytics/pNet/tree/main/Hierarchical-FNs
Hierarchical-FNs	https://github.com/MLDataAnalytics/pNet/tree/main/Hierarchical-FNs
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src/pnet	https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet
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fmripnet.py	https://github.com/MLDataAnalytics/pNet/blob/main/fmripnet.py
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requirements.txt	https://github.com/MLDataAnalytics/pNet/blob/main/requirements.txt
setup.py	https://github.com/MLDataAnalytics/pNet/blob/main/setup.py
setup.py	https://github.com/MLDataAnalytics/pNet/blob/main/setup.py
README	https://github.com/MLDataAnalytics/pNet
	https://github.com/MLDataAnalytics/pNet#pnet-personalized-sparse-functional-network-estimation-for-fmri-data
	https://github.com/MLDataAnalytics/pNet
	https://pubmed.ncbi.nlm.nih.gov/28483721
	https://pubmed.ncbi.nlm.nih.gov/32078800
	https://pubmed.ncbi.nlm.nih.gov/36706636
	https://www.biorxiv.org/content/10.1101/2025.04.07.647618v1.abstract
	https://github.com/MLDataAnalytics/pNet#-whats-new
individualized multi-scale hierarchical brain functional networks	https://www.biorxiv.org/content/10.1101/2025.04.07.647618v1.abstract
	https://github.com/MLDataAnalytics/pNet#-docker-support
	https://github.com/MLDataAnalytics/pNet#-cpu-version
	https://github.com/MLDataAnalytics/pNet#-gpu-version-cuda-enabled
./Hierarchical-FNs/README.md	https://github.com/MLDataAnalytics/pNet/blob/main/Hierarchical-FNs/README.md
	https://github.com/MLDataAnalytics/pNet#-why-pnet-unveiling-individual-brain-topography
	https://github.com/MLDataAnalytics/pNet#️-key-features--quality-control
pNet	https://github.com/MLDataAnalytics/pNet
	https://github.com/MLDataAnalytics/pNet#pnet
algorithm	https://pubmed.ncbi.nlm.nih.gov/28483721
functional topography	https://pubmed.ncbi.nlm.nih.gov/32078800
quality control	https://pubmed.ncbi.nlm.nih.gov/36706636
algorithm	https://pubmed.ncbi.nlm.nih.gov/28483721
individual variation in functional topography of association networks in youth	https://pubmed.ncbi.nlm.nih.gov/32078800
functional network topography of psychopathology in youth	https://pubmed.ncbi.nlm.nih.gov/35927072
sex differences in the functional topography of association networks in youth	https://pubmed.ncbi.nlm.nih.gov/35939696
Reproducible Sex Differences in Personalized Functional Network Topography in Youth	https://www.biorxiv.org/content/10.1101/2024.09.26.615061v1
dissociable multi-scale patterns of development in personalized brain networks	https://pubmed.ncbi.nlm.nih.gov/35551181
multiscale functional connectivity patterns of the aging brain	https://pubmed.ncbi.nlm.nih.gov/36731813
personalized functional brain network topography in youth cognition	https://pubmed.ncbi.nlm.nih.gov/38110396
Polygenic Risk Underlies Youth Psychopathology and Personalized Functional Brain Network Topography	https://www.medrxiv.org/content/10.1101/2024.09.20.24314007v2
individualized multi-scale hierarchical brain functional networks	https://www.biorxiv.org/content/10.1101/2025.04.07.647618v1.abstract
	https://github.com/MLDataAnalytics/pNet/blob/main/assets/pNet.png
	https://github.com/MLDataAnalytics/pNet#-getting-started
APIs	https://pnet.readthedocs.io/en/latest/api.html
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TrobubleShooting	https://github.com/MLDataAnalytics/pNet?tab=readme-ov-file#troubleshooting
	https://github.com/MLDataAnalytics/pNet#run-with-a-docker-image
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	https://github.com/MLDataAnalytics/pNet#run-with-a-singularity-singularityce-image
	https://github.com/MLDataAnalytics/pNet#download-and-install-pnet
	https://github.com/MLDataAnalytics/pNet#1download-pnet
	https://github.com/MLDataAnalytics/pNet#2create-a-new-conda-environment-for-pnet
	https://github.com/MLDataAnalytics/pNet#3install-pnet
	https://github.com/MLDataAnalytics/pNet#script-usages
	https://github.com/MLDataAnalytics/pNet#1-prepare-data
cli folder	https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/cli
precomputed templates	https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/Brain_Template
instructions	https://github.com/MLDataAnalytics/pNet/blob/main/src/pnet/Brain_Template/create_vol_template.md
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	https://github.com/MLDataAnalytics/pNet#2-example-files-of-scans-and-configuration
	https://github.com/MLDataAnalytics/pNet#3-run-the-computation-examples-can-be-found-in-examples-folder
	https://github.com/MLDataAnalytics/pNet#code-examples-and-usages
	https://github.com/MLDataAnalytics/pNet#1prepare-data
	https://github.com/MLDataAnalytics/pNet#2setup-the-computation
	https://github.com/MLDataAnalytics/pNet#3-example-code
	https://github.com/MLDataAnalytics/pNet#brain-templates-and-precomputed-group-fns
	https://github.com/MLDataAnalytics/pNet#brain-template
Brain_Template	https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/Brain_Template
cli folder	https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/cli
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instructions	https://github.com/MLDataAnalytics/pNet/blob/main/src/pnet/Brain_Template/create_vol_template.md
	https://github.com/MLDataAnalytics/pNet#precomputed-group-fns
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	https://github.com/MLDataAnalytics/pNet#quality-control
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	https://github.com/MLDataAnalytics/pNet#-references
Mapping individualized multi-scale hierarchical brain functional networks from fMRI by self-supervised deep learning	https://doi.org/10.1101/2025.04.07.647618
Large-scale sparse functional networks from resting state fMRI	https://pubmed.ncbi.nlm.nih.gov/28483721/
Identification of subject-specific brain functional networks using a collaborative sparse nonnegative matrix decomposition method	https://doi.org/10.1109/ISBI.2016.7493430
Identification of Multi-scale Hierarchical Brain Functional Networks Using Deep Matrix Factorization	https://doi.org/10.1007/978-3-030-00931-1_26
Individual Variation in Functional Topography of Association Networks in Youth	https://pubmed.ncbi.nlm.nih.gov/32078800/
Dissociable multi-scale patterns of development in personalized brain networks	https://pubmed.ncbi.nlm.nih.gov/35551181/
Linking Individual Differences in Personalized Functional Network Topography to Psychopathology in Youth	https://pubmed.ncbi.nlm.nih.gov/35927072/
Sex differences in the functional topography of association networks in youth	https://pubmed.ncbi.nlm.nih.gov/35939696/
Personalized functional brain network topography is associated with individual differences in youth cognition	https://pubmed.ncbi.nlm.nih.gov/38110396/
Multiscale functional connectivity patterns of the aging brain learned from harmonized rsfMRI data of the multi-cohort iSTAGING study	https://pubmed.ncbi.nlm.nih.gov/36731813/
Computing personalized brain functional networks from fMRI using self-supervised deep learning	https://pubmed.ncbi.nlm.nih.gov/36706636/
Reproducible sex differences in personalised functional network topography in youth	https://doi.org/10.1192/bjp.2025.135
Polygenic Risk, Psychopathology, and Personalized Functional Brain Network Topography in Adolescence	https://doi.org/10.1001/jamapsychiatry.2025.1258
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