René's URL Explorer Experiment

Title: GitHub - LiuLab-Bioelectronics-Harvard/STAgent: STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data · GitHub

Open Graph Title: GitHub - LiuLab-Bioelectronics-Harvard/STAgent: STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data

X Title: GitHub - LiuLab-Bioelectronics-Harvard/STAgent: STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data

Description: STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data - LiuLab-Bioelectronics-Harvard/STAgent

Open Graph Description: STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data - LiuLab-Bioelectronics-Harvard/STAgent

X Description: STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data - LiuLab-Bioelectronics-Harvard/STAgent

Opengraph URL: https://github.com/LiuLab-Bioelectronics-Harvard/STAgent

X: @github

direct link

Domain: github.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:34fc7e0f-0254-c99c-6611-1be945ab6b7e
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	EC5E:265A7D:11DF9CE:18073C9:6A4C586F
html-safe-nonce	4df4777b33d68e4b26e8fa63b1383869c12bb9376a56e2041819aef27f7c08bf
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFQzVFOjI2NUE3RDoxMURGOUNFOjE4MDczQzk6NkE0QzU4NkYiLCJ2aXNpdG9yX2lkIjoiODUyNTA5OTUyODQxOTU2MzYzMSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac	4c441955bcb331a15eb6847349b1d2885e18ec9c02ab7d732ee7e1096a17663f
hovercard-subject-tag	repository:955342026
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
twitter:image	https://opengraph.githubassets.com/d660977b7adb0c6e7c9cc4b37b30570ff6d57987920c0f771351d945fc2ec1f1/LiuLab-Bioelectronics-Harvard/STAgent
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/d660977b7adb0c6e7c9cc4b37b30570ff6d57987920c0f771351d945fc2ec1f1/LiuLab-Bioelectronics-Harvard/STAgent
og:image:alt	STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data - LiuLab-Bioelectronics-Harvard/STAgent
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-control	no-cache
go-import	github.com/LiuLab-Bioelectronics-Harvard/STAgent git https://github.com/LiuLab-Bioelectronics-Harvard/STAgent.git
octolytics-dimension-user_id	82493541
octolytics-dimension-user_login	LiuLab-Bioelectronics-Harvard
octolytics-dimension-repository_id	955342026
octolytics-dimension-repository_nwo	LiuLab-Bioelectronics-Harvard/STAgent
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	false
octolytics-dimension-repository_network_root_id	955342026
octolytics-dimension-repository_network_root_nwo	LiuLab-Bioelectronics-Harvard/STAgent
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	14099438da5379150f15a2892474c7c7e6c0e55e
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#start-of-content
	https://github.com/
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FLiuLab-Bioelectronics-Harvard%2FSTAgent
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub Copilot appDirect agents from issue to merge	https://github.com/features/ai/github-app
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
View all resources	https://github.com/resources
GitHub SponsorsFund open source developers	https://github.com/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/accelerator
GitHub Stars	https://stars.github.com
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FLiuLab-Bioelectronics-Harvard%2FSTAgent
Sign up	https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=LiuLab-Bioelectronics-Harvard%2FSTAgent
Reload	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Reload	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Reload	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Please reload this page	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
LiuLab-Bioelectronics-Harvard	https://github.com/LiuLab-Bioelectronics-Harvard
STAgent	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Notifications	https://github.com/login?return_to=%2FLiuLab-Bioelectronics-Harvard%2FSTAgent
Fork 15	https://github.com/login?return_to=%2FLiuLab-Bioelectronics-Harvard%2FSTAgent
Star 59	https://github.com/login?return_to=%2FLiuLab-Bioelectronics-Harvard%2FSTAgent
Code	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Issues 0	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/issues
Pull requests 0	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/pulls
Actions	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/actions
Projects	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/projects
Security and quality 0	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/security
Insights	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/pulse
Code	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Issues	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/issues
Pull requests	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/pulls
Actions	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/actions
Projects	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/projects
Security and quality	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/security
Insights	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/pulse
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Branches	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/branches
Tags	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tags
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/branches
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tags
45 Commits	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/commits/main/
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/commits/main/
assets/images	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/assets/images
assets/images	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/assets/images
db/chroma_squidpy_db	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/db/chroma_squidpy_db
db/chroma_squidpy_db	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/db/chroma_squidpy_db
packages_available	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/packages_available
packages_available	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/packages_available
src	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/src
src	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/tree/main/src
.gitignore	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/.gitignore
.gitignore	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/.gitignore
LICENSE	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/LICENSE
LICENSE	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/LICENSE
README.md	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/README.md
README.md	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/README.md
environment.gpu.yml	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/environment.gpu.yml
environment.gpu.yml	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/environment.gpu.yml
environment.yml	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/environment.yml
environment.yml	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/environment.yml
README	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Apache-2.0 license	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#stagent
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/stargazers
	https://opensource.org/licenses/MIT
https://doi.org/10.1101/2025.04.01.646731	https://doi.org/10.1101/2025.04.01.646731
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#overview
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/assets/images/stagent_architecture.png
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#features
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#end-to-end-automation
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#flexible-pipeline
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#multimodal-interaction
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#autonomous-reasoning
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#conflict-checking
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#deeper-research-support
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#interpretable-results
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#context-aware-gene-analysis
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#visual-reasoning-engine
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#scalable-knowledge-synthesis
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#package-contents
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#installation
https://pytorch.org/get-started/locally/	https://pytorch.org/get-started/locally/
https://pytorch-geometric.readthedocs.io/en/latest/install/installation.html	https://pytorch-geometric.readthedocs.io/en/latest/install/installation.html
https://github.com/pyg-team/pytorch_geometric?tab=readme-ov-file	https://github.com/pyg-team/pytorch_geometric?tab=readme-ov-file
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#required-and-optional-environment-variables
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#running-the-app
Google Drive	https://drive.google.com/drive/folders/1RqWGBhCia06-vQnqHUnid63MybQIKwFJ
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#data-and-outputs
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#demo
demo video	https://www.youtube.com/watch?v=aEUop05RINY&t=2s
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#citation
https://doi.org/10.1101/2025.04.01.646731	https://doi.org/10.1101/2025.04.01.646731
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#license
LICENSE	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/blob/main/LICENSE
	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#acknowledgement
https://github.com/zhoux85/STAligner	https://github.com/zhoux85/STAligner
https://github.com/langchain-ai/open_deep_research	https://github.com/langchain-ai/open_deep_research
doi.org/10.1101/2025.04.01.646731	https://doi.org/10.1101/2025.04.01.646731
agent	https://github.com/topics/agent
ai	https://github.com/topics/ai
transcriptomics	https://github.com/topics/transcriptomics
agents	https://github.com/topics/agents
transcriptomics-datasets	https://github.com/topics/transcriptomics-datasets
transcriptomics-data	https://github.com/topics/transcriptomics-data
llm	https://github.com/topics/llm
aiagent	https://github.com/topics/aiagent
aiagentic	https://github.com/topics/aiagentic
Readme	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#readme-ov-file
Apache-2.0 license	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent#Apache-2.0-1-ov-file
Please reload this page	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Activity	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/activity
Custom properties	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/custom-properties
15 forks	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/forks
Report repository	https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FLiuLab-Bioelectronics-Harvard%2FSTAgent&report=LiuLab-Bioelectronics-Harvard+%28user%29
Releases	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/releases
Packages 0	https://github.com/orgs/LiuLab-Bioelectronics-Harvard/packages?repo_name=STAgent
Please reload this page	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Contributors	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/graphs/contributors
Please reload this page	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent
Jupyter Notebook 84.1%	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/search?l=jupyter-notebook
Python 15.9%	https://github.com/LiuLab-Bioelectronics-Harvard/STAgent/search?l=python
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.