René's URL Explorer Experiment


Title: GitHub - JEFworks-Lab/STalign: Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping · GitHub

Open Graph Title: GitHub - JEFworks-Lab/STalign: Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

X Title: GitHub - JEFworks-Lab/STalign: Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

Description: Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping - JEFworks-Lab/STalign

Open Graph Description: Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping - JEFworks-Lab/STalign

X Description: Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping - JEFworks-Lab/STalign

Opengraph URL: https://github.com/JEFworks-Lab/STalign

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:92b87bf4-80ad-3cc5-f93a-6c0d5ca33dfc
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9F1A:163FF7:9A6C97:DE09B1:6A4CEBD0
html-safe-noncee8da0ed021c41b153472e77c1a1fc4e15b6935550c7e5d99e3b96fdade405d05
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5RjFBOjE2M0ZGNzo5QTZDOTc6REUwOUIxOjZBNENFQkQwIiwidmlzaXRvcl9pZCI6IjE0MTE4ODcyODk2NDcwMzMyOTYiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac25ab09fa73a7a6dda2145e606850cab32a0b7d161533606d1d4b543c1a93a92b
hovercard-subject-tagrepository:612291985
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/JEFworks-Lab/STalign
twitter:imagehttps://opengraph.githubassets.com/0278c27b9ffaf6e07d47fee683829964bc51cf3187a0fd9587a9cbb196b5e58c/JEFworks-Lab/STalign
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/0278c27b9ffaf6e07d47fee683829964bc51cf3187a0fd9587a9cbb196b5e58c/JEFworks-Lab/STalign
og:image:altPython tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping - JEFworks-Lab/STalign
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None299b43bca6e02ad35197ffeba30d2466846d5fb02ab96fbced5b5e6cec589fb8
turbo-cache-controlno-cache
go-importgithub.com/JEFworks-Lab/STalign git https://github.com/JEFworks-Lab/STalign.git
octolytics-dimension-user_id68028140
octolytics-dimension-user_loginJEFworks-Lab
octolytics-dimension-repository_id612291985
octolytics-dimension-repository_nwoJEFworks-Lab/STalign
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id612291985
octolytics-dimension-repository_network_root_nwoJEFworks-Lab/STalign
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasec5a57f04eeb310f57c73fd6d751d957e2ca27ed2
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/JEFworks-Lab/STalign#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FJEFworks-Lab%2FSTalign
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FJEFworks-Lab%2FSTalign
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=JEFworks-Lab%2FSTalign
Reloadhttps://github.com/JEFworks-Lab/STalign
Reloadhttps://github.com/JEFworks-Lab/STalign
Reloadhttps://github.com/JEFworks-Lab/STalign
Please reload this pagehttps://github.com/JEFworks-Lab/STalign
JEFworks-Lab https://github.com/JEFworks-Lab
STalignhttps://github.com/JEFworks-Lab/STalign
Notifications https://github.com/login?return_to=%2FJEFworks-Lab%2FSTalign
Fork 25 https://github.com/login?return_to=%2FJEFworks-Lab%2FSTalign
Star 101 https://github.com/login?return_to=%2FJEFworks-Lab%2FSTalign
Code https://github.com/JEFworks-Lab/STalign
Issues 21 https://github.com/JEFworks-Lab/STalign/issues
Pull requests 2 https://github.com/JEFworks-Lab/STalign/pulls
Actions https://github.com/JEFworks-Lab/STalign/actions
Projects https://github.com/JEFworks-Lab/STalign/projects
Security and quality 0 https://github.com/JEFworks-Lab/STalign/security
Insights https://github.com/JEFworks-Lab/STalign/pulse
Code https://github.com/JEFworks-Lab/STalign
Issues https://github.com/JEFworks-Lab/STalign/issues
Pull requests https://github.com/JEFworks-Lab/STalign/pulls
Actions https://github.com/JEFworks-Lab/STalign/actions
Projects https://github.com/JEFworks-Lab/STalign/projects
Security and quality https://github.com/JEFworks-Lab/STalign/security
Insights https://github.com/JEFworks-Lab/STalign/pulse
https://github.com/JEFworks-Lab/STalign
Brancheshttps://github.com/JEFworks-Lab/STalign/branches
Tagshttps://github.com/JEFworks-Lab/STalign/tags
https://github.com/JEFworks-Lab/STalign/branches
https://github.com/JEFworks-Lab/STalign/tags
215 Commitshttps://github.com/JEFworks-Lab/STalign/commits/main/
https://github.com/JEFworks-Lab/STalign/commits/main/
.github/workflowshttps://github.com/JEFworks-Lab/STalign/tree/main/.github/workflows
.github/workflowshttps://github.com/JEFworks-Lab/STalign/tree/main/.github/workflows
STalignhttps://github.com/JEFworks-Lab/STalign/tree/main/STalign
STalignhttps://github.com/JEFworks-Lab/STalign/tree/main/STalign
_buildhttps://github.com/JEFworks-Lab/STalign/tree/main/_build
_buildhttps://github.com/JEFworks-Lab/STalign/tree/main/_build
docshttps://github.com/JEFworks-Lab/STalign/tree/main/docs
docshttps://github.com/JEFworks-Lab/STalign/tree/main/docs
.gitignorehttps://github.com/JEFworks-Lab/STalign/blob/main/.gitignore
.gitignorehttps://github.com/JEFworks-Lab/STalign/blob/main/.gitignore
.readthedocs.yamlhttps://github.com/JEFworks-Lab/STalign/blob/main/.readthedocs.yaml
.readthedocs.yamlhttps://github.com/JEFworks-Lab/STalign/blob/main/.readthedocs.yaml
LICENSEhttps://github.com/JEFworks-Lab/STalign/blob/main/LICENSE
LICENSEhttps://github.com/JEFworks-Lab/STalign/blob/main/LICENSE
Pipfilehttps://github.com/JEFworks-Lab/STalign/blob/main/Pipfile
Pipfilehttps://github.com/JEFworks-Lab/STalign/blob/main/Pipfile
README.mdhttps://github.com/JEFworks-Lab/STalign/blob/main/README.md
README.mdhttps://github.com/JEFworks-Lab/STalign/blob/main/README.md
STalign_logos_fin.pnghttps://github.com/JEFworks-Lab/STalign/blob/main/STalign_logos_fin.png
STalign_logos_fin.pnghttps://github.com/JEFworks-Lab/STalign/blob/main/STalign_logos_fin.png
pipenv-requirements.txthttps://github.com/JEFworks-Lab/STalign/blob/main/pipenv-requirements.txt
pipenv-requirements.txthttps://github.com/JEFworks-Lab/STalign/blob/main/pipenv-requirements.txt
requirements.txthttps://github.com/JEFworks-Lab/STalign/blob/main/requirements.txt
requirements.txthttps://github.com/JEFworks-Lab/STalign/blob/main/requirements.txt
setup.pyhttps://github.com/JEFworks-Lab/STalign/blob/main/setup.py
setup.pyhttps://github.com/JEFworks-Lab/STalign/blob/main/setup.py
READMEhttps://github.com/JEFworks-Lab/STalign
GPL-3.0 licensehttps://github.com/JEFworks-Lab/STalign
https://raw.githubusercontent.com/JEFworks-Lab/STalign/main/STalign_logos_fin.png
STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping Kalen Clifton*, Manjari Anant*, Gohta Aihara, Lyla Atta, Osagie K Aimiuwu, Justus M Kebschull, Michael I Miller, Daniel Tward^, Jean Fan^ https://www.nature.com/articles/s41467-023-43915-7
https://github.com/JEFworks-Lab/STalign#overview
https://camo.githubusercontent.com/3803ecb18ca6ef5224519364ba8442bb93e0766d6031280e8d46e2588908ec59/68747470733a2f2f6a65662e776f726b732f6173736574732f7061706572732f5354616c69676e5f616e696d5f736d616c6c2e676966
https://github.com/JEFworks-Lab/STalign#installation--import
https://github.com/JEFworks-Lab/STalign#installation-using-pip
https://github.com/JEFworks-Lab/STalign#installation-using-pipfile-from-source
https://pipenv.pypa.io/en/latest/https://pipenv.pypa.io/en/latest/
https://github.com/JEFworks-Lab/STalign#import
https://github.com/JEFworks-Lab/STalign#input-data
https://github.com/JEFworks-Lab/STalign#single-cell-resolution-st-alignment
https://github.com/JEFworks-Lab/STalign#single-cell-and-spot-resolution-st-alignment
https://github.com/JEFworks-Lab/STalign#3d-2d-alignment
https://github.com/JEFworks-Lab/STalign#usage
tutorialshttps://jef.works/STalign/tutorials.html
jef.works/STalign/https://jef.works/STalign/
bioinformatics https://github.com/topics/bioinformatics
alignment https://github.com/topics/alignment
diffeomorphism https://github.com/topics/diffeomorphism
singlecell https://github.com/topics/singlecell
spatialtranscriptomics https://github.com/topics/spatialtranscriptomics
Readme https://github.com/JEFworks-Lab/STalign#readme-ov-file
GPL-3.0 license https://github.com/JEFworks-Lab/STalign#GPL-3.0-1-ov-file
Please reload this pagehttps://github.com/JEFworks-Lab/STalign
Activityhttps://github.com/JEFworks-Lab/STalign/activity
Custom propertieshttps://github.com/JEFworks-Lab/STalign/custom-properties
25 forkshttps://github.com/JEFworks-Lab/STalign/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FJEFworks-Lab%2FSTalign&report=JEFworks-Lab+%28user%29
Releases 2https://github.com/JEFworks-Lab/STalign/releases
Zenodo Initial Release Latest Nov 20, 2023 https://github.com/JEFworks-Lab/STalign/releases/tag/v1.0.1
+ 1 releasehttps://github.com/JEFworks-Lab/STalign/releases
Packages 0https://github.com/orgs/JEFworks-Lab/packages?repo_name=STalign
Please reload this pagehttps://github.com/JEFworks-Lab/STalign
Please reload this pagehttps://github.com/JEFworks-Lab/STalign
Contributorshttps://github.com/JEFworks-Lab/STalign/graphs/contributors
Please reload this pagehttps://github.com/JEFworks-Lab/STalign
HTML 59.3% https://github.com/JEFworks-Lab/STalign/search?l=html
Python 40.7% https://github.com/JEFworks-Lab/STalign/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.