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Title: Pull requests · GreenleafLab/ArchR · GitHub

Open Graph Title: Pull requests · GreenleafLab/ArchR

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Description: ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com) - Pull requests · GreenleafLab/ArchR

Open Graph Description: ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com) - Pull requests · GreenleafLab/ArchR

X Description: ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com) - Pull requests · GreenleafLab/ArchR

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Fix issues with addmodulescore and addGeneIntegrationMatrixhttps://github.com/GreenleafLab/ArchR/pull/2321
Liuy12https://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3ALiuy12
https://github.com/GreenleafLab/ArchR/pull/2321
Save more narrowPeak info to the replicate summits .rds filehttps://github.com/GreenleafLab/ArchR/pull/2311
WSpaceWanghttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3AWSpaceWang
https://github.com/GreenleafLab/ArchR/pull/2311
Update .copyArrowSinglehttps://github.com/GreenleafLab/ArchR/pull/2289
dgodovichhttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Adgodovich
https://github.com/GreenleafLab/ArchR/pull/2289
for branch dev: add missing dependency declarations to methods and utilshttps://github.com/GreenleafLab/ArchR/pull/2184
waddellahttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Awaddella
https://github.com/GreenleafLab/ArchR/pull/2184
add missing dependency declarations to methods and utilshttps://github.com/GreenleafLab/ArchR/pull/2183
waddellahttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Awaddella
https://github.com/GreenleafLab/ArchR/pull/2183
add version argument for writing gene expression to hdf5https://github.com/GreenleafLab/ArchR/pull/2161
szcf-weiyahttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Aszcf-weiya
https://github.com/GreenleafLab/ArchR/pull/2161
Remove no space requirement for paths in AllClasses.Rhttps://github.com/GreenleafLab/ArchR/pull/2054
arprievehttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Aarprieve
https://github.com/GreenleafLab/ArchR/pull/2054
PositiveTFHeatmaphttps://github.com/GreenleafLab/ArchR/pull/2033
Sky970415https://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3ASky970415
https://github.com/GreenleafLab/ArchR/pull/2033
Add rworkflows GitHub Actionshttps://github.com/GreenleafLab/ArchR/pull/2016
bschilderhttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Abschilder
4 https://github.com/GreenleafLab/ArchR/pull/2016
https://github.com/GreenleafLab/ArchR/pull/2016
ShinyArchR_testPullhttps://github.com/GreenleafLab/ArchR/pull/1799
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https://github.com/GreenleafLab/ArchR/pull/1799
Add CCA batch correction methodhttps://github.com/GreenleafLab/ArchR/pull/1737
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1 https://github.com/GreenleafLab/ArchR/pull/1737
https://github.com/GreenleafLab/ArchR/pull/1737
save macs2 fold enrichment signal value in summitshttps://github.com/GreenleafLab/ArchR/pull/1493
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add name to peakSet / PeakMatrixhttps://github.com/GreenleafLab/ArchR/pull/1426
rcorceshttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Arcorces
https://github.com/GreenleafLab/ArchR/pull/1426
Dev project bulk atac2https://github.com/GreenleafLab/ArchR/pull/1390
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https://github.com/GreenleafLab/ArchR/pull/1390
To fix the problem of provider_version slothttps://github.com/GreenleafLab/ArchR/pull/453
0CBH0https://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3A0CBH0
https://github.com/GreenleafLab/ArchR/pull/453
Fixed duplicated word (on line 49)https://github.com/GreenleafLab/ArchR/pull/224
kanthttps://github.com/GreenleafLab/ArchR/issues?q=is%3Apr+is%3Aopen+author%3Akant
https://github.com/GreenleafLab/ArchR/pull/224
Two small bugshttps://github.com/GreenleafLab/ArchR/pull/157
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