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Title: GitHub - FunctionLab/sei-framework: code to run sei and obtain sei and sequence class predictions

Open Graph Title: GitHub - FunctionLab/sei-framework: code to run sei and obtain sei and sequence class predictions

X Title: GitHub - FunctionLab/sei-framework: code to run sei and obtain sei and sequence class predictions

Description: code to run sei and obtain sei and sequence class predictions - FunctionLab/sei-framework

Open Graph Description: code to run sei and obtain sei and sequence class predictions - FunctionLab/sei-framework

X Description: code to run sei and obtain sei and sequence class predictions - FunctionLab/sei-framework

Mail addresses
chen.kathleenm@gmail.com
tzodikov@princeton.edu

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	https://github.com/FunctionLab/sei-framework/blob/main/images/logo.png
here	https://doi.org/10.1038/s41588-022-01102-2
how to train the Sei deep learning sequence model	https://github.com/FunctionLab/sei-framework#training
	https://github.com/FunctionLab/sei-framework#requirements
here	https://pytorch.org/get-started/locally/
here	https://github.com/FunctionLab/selene
	https://github.com/FunctionLab/sei-framework#setup
Sei model	https://doi.org/10.5281/zenodo.4906996
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	https://github.com/FunctionLab/sei-framework#chromatin-profile-prediction
	https://github.com/FunctionLab/sei-framework#sequence-class-prediction
this Zenodo record	https://doi.org/10.5281/zenodo.7113988
	https://github.com/FunctionLab/sei-framework#sequence-prediction
	https://github.com/FunctionLab/sei-framework#variant-effect-prediction
	https://github.com/FunctionLab/sei-framework#example-variant-effect-prediction-run
	https://github.com/FunctionLab/sei-framework#sequence-classes
	https://github.com/FunctionLab/sei-framework#training
here	https://doi.org/10.5281/zenodo.4907037
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here	https://selene.flatironinstitute.org/master/overview/cli.html
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	https://github.com/FunctionLab/sei-framework#help
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