René's URL Explorer Experiment

Title: GitHub - DyogenIBENS/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. · GitHub

Open Graph Title: GitHub - DyogenIBENS/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

X Title: GitHub - DyogenIBENS/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

Description: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - GitHub - DyogenIBENS/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

Open Graph Description: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - DyogenIBENS/SCORPIOS

X Description: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - DyogenIBENS/SCORPIOS

Mail addresses
elise.parey@bio.ens.psl.eu

Opengraph URL: https://github.com/DyogenIBENS/SCORPIOS

X: @github

direct link

Domain: github.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:1b8c4639-23a0-5508-d15d-8c25044b47a3
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	9EE4:3F705B:31DE7A4:4300DC0:6A5DBFC4
html-safe-nonce	dd2dafe421dd70ef79293c83538004af48d5562f8d9e70b62851ed32402d311e
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5RUU0OjNGNzA1QjozMURFN0E0OjQzMDBEQzA6NkE1REJGQzQiLCJ2aXNpdG9yX2lkIjoiNzA5MzM2MDIxMzQwMTEwNzg4IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac	86ad439ada39bbf1ac63efe8584268313afa134d3e859ce2a8128b0bf47d4160
hovercard-subject-tag	repository:226113148
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/DyogenIBENS/SCORPIOS
twitter:image	https://opengraph.githubassets.com/9780603bfdc4bee3eb6214c96f5905f5c3085b5d47c5ec674ebf7504b477cc9e/DyogenIBENS/SCORPIOS
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/9780603bfdc4bee3eb6214c96f5905f5c3085b5d47c5ec674ebf7504b477cc9e/DyogenIBENS/SCORPIOS
og:image:alt	SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - DyogenIBENS/SCORPIOS
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	5290d7e14309ad1e76106a9c4237bd1041517e83ea182c8ab756752cb0c6940b
turbo-cache-control	no-cache
go-import	github.com/DyogenIBENS/SCORPIOS git https://github.com/DyogenIBENS/SCORPIOS.git
octolytics-dimension-user_id	7570147
octolytics-dimension-user_login	DyogenIBENS
octolytics-dimension-repository_id	226113148
octolytics-dimension-repository_nwo	DyogenIBENS/SCORPIOS
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	false
octolytics-dimension-repository_network_root_id	226113148
octolytics-dimension-repository_network_root_nwo	DyogenIBENS/SCORPIOS
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	9c975978430e9ad293956f2bbdaf153b1bd84a99
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://github.com/DyogenIBENS/SCORPIOS#start-of-content
	https://github.com/
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDyogenIBENS%2FSCORPIOS
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub Copilot appDirect agents from issue to merge	https://github.com/features/ai/github-app
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
View all resources	https://github.com/resources
GitHub SponsorsFund open source developers	https://github.com/open-source/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/open-source/accelerator
GitHub Stars	https://stars.github.com
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/enterprise/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDyogenIBENS%2FSCORPIOS
Sign up	https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DyogenIBENS%2FSCORPIOS
Reload	https://github.com/DyogenIBENS/SCORPIOS
Reload	https://github.com/DyogenIBENS/SCORPIOS
Reload	https://github.com/DyogenIBENS/SCORPIOS
DyogenIBENS	https://github.com/DyogenIBENS
SCORPIOS	https://github.com/DyogenIBENS/SCORPIOS
Notifications	https://github.com/login?return_to=%2FDyogenIBENS%2FSCORPIOS
Fork 3	https://github.com/login?return_to=%2FDyogenIBENS%2FSCORPIOS
Star 24	https://github.com/login?return_to=%2FDyogenIBENS%2FSCORPIOS
Code	https://github.com/DyogenIBENS/SCORPIOS
Issues 0	https://github.com/DyogenIBENS/SCORPIOS/issues
Pull requests 0	https://github.com/DyogenIBENS/SCORPIOS/pulls
Actions	https://github.com/DyogenIBENS/SCORPIOS/actions
Projects	https://github.com/DyogenIBENS/SCORPIOS/projects
Security and quality 0	https://github.com/DyogenIBENS/SCORPIOS/security
Insights	https://github.com/DyogenIBENS/SCORPIOS/pulse
Code	https://github.com/DyogenIBENS/SCORPIOS
Issues	https://github.com/DyogenIBENS/SCORPIOS/issues
Pull requests	https://github.com/DyogenIBENS/SCORPIOS/pulls
Actions	https://github.com/DyogenIBENS/SCORPIOS/actions
Projects	https://github.com/DyogenIBENS/SCORPIOS/projects
Security and quality	https://github.com/DyogenIBENS/SCORPIOS/security
Insights	https://github.com/DyogenIBENS/SCORPIOS/pulse
	https://github.com/DyogenIBENS/SCORPIOS
Branches	https://github.com/DyogenIBENS/SCORPIOS/branches
Tags	https://github.com/DyogenIBENS/SCORPIOS/tags
	https://github.com/DyogenIBENS/SCORPIOS/branches
	https://github.com/DyogenIBENS/SCORPIOS/tags
423 Commits	https://github.com/DyogenIBENS/SCORPIOS/commits/master/
	https://github.com/DyogenIBENS/SCORPIOS/commits/master/
data	https://github.com/DyogenIBENS/SCORPIOS/tree/master/data
data	https://github.com/DyogenIBENS/SCORPIOS/tree/master/data
doc	https://github.com/DyogenIBENS/SCORPIOS/tree/master/doc
doc	https://github.com/DyogenIBENS/SCORPIOS/tree/master/doc
envs	https://github.com/DyogenIBENS/SCORPIOS/tree/master/envs
envs	https://github.com/DyogenIBENS/SCORPIOS/tree/master/envs
scripts	https://github.com/DyogenIBENS/SCORPIOS/tree/master/scripts
scripts	https://github.com/DyogenIBENS/SCORPIOS/tree/master/scripts
.gitignore	https://github.com/DyogenIBENS/SCORPIOS/blob/master/.gitignore
.gitignore	https://github.com/DyogenIBENS/SCORPIOS/blob/master/.gitignore
.pylintrc	https://github.com/DyogenIBENS/SCORPIOS/blob/master/.pylintrc
.pylintrc	https://github.com/DyogenIBENS/SCORPIOS/blob/master/.pylintrc
.readthedocs.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/.readthedocs.yaml
.readthedocs.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/.readthedocs.yaml
CHANGELOG.rst	https://github.com/DyogenIBENS/SCORPIOS/blob/master/CHANGELOG.rst
CHANGELOG.rst	https://github.com/DyogenIBENS/SCORPIOS/blob/master/CHANGELOG.rst
LICENSE.txt	https://github.com/DyogenIBENS/SCORPIOS/blob/master/LICENSE.txt
LICENSE.txt	https://github.com/DyogenIBENS/SCORPIOS/blob/master/LICENSE.txt
README.md	https://github.com/DyogenIBENS/SCORPIOS/blob/master/README.md
README.md	https://github.com/DyogenIBENS/SCORPIOS/blob/master/README.md
Snakefile	https://github.com/DyogenIBENS/SCORPIOS/blob/master/Snakefile
Snakefile	https://github.com/DyogenIBENS/SCORPIOS/blob/master/Snakefile
config_example.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example.yaml
config_example.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example.yaml
config_example2.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example2.yaml
config_example2.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example2.yaml
config_example2_lorelei.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example2_lorelei.yaml
config_example2_lorelei.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example2_lorelei.yaml
iterate_scorpios.sh	https://github.com/DyogenIBENS/SCORPIOS/blob/master/iterate_scorpios.sh
iterate_scorpios.sh	https://github.com/DyogenIBENS/SCORPIOS/blob/master/iterate_scorpios.sh
module_build_trees.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_build_trees.smk
module_build_trees.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_build_trees.smk
module_correct_trees.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_correct_trees.smk
module_correct_trees.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_correct_trees.smk
module_graphs_orthogroups.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_graphs_orthogroups.smk
module_graphs_orthogroups.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_graphs_orthogroups.smk
module_lorelei_diagnostic.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_lorelei_diagnostic.smk
module_lorelei_diagnostic.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_lorelei_diagnostic.smk
module_lorelei_lktests.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_lorelei_lktests.smk
module_lorelei_lktests.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_lorelei_lktests.smk
module_orthology_table.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_orthology_table.smk
module_orthology_table.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_orthology_table.smk
module_synteny_ortho_para.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_synteny_ortho_para.smk
module_synteny_ortho_para.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/module_synteny_ortho_para.smk
scorpios_lorelei.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/scorpios_lorelei.smk
scorpios_lorelei.smk	https://github.com/DyogenIBENS/SCORPIOS/blob/master/scorpios_lorelei.smk
README	https://github.com/DyogenIBENS/SCORPIOS
GPL-3.0 license	https://github.com/DyogenIBENS/SCORPIOS
	https://github.com/DyogenIBENS/SCORPIOS#scorpios---synteny-guided-correction-of-paralogies-and-orthologies
	https://doi.org/10.5281/zenodo.3727519
	https://www.gnu.org/licenses/gpl-3.0
	https://snakemake.bitbucket.io
	https://scorpios.readthedocs.io/en/latest/?badge=latest
Snakemake	https://snakemake.readthedocs.io/en/stable/
SCORPiOs documentation	https://scorpios.readthedocs.io/en/latest/
	https://github.com/DyogenIBENS/SCORPIOS/blob/master/doc/img/scorpios_illustrated.png
https://doi.org/10.1093/molbev/msaa149	https://doi.org/10.1093/molbev/msaa149
	https://github.com/DyogenIBENS/SCORPIOS#quick-start
SCORPiOs documentation	https://scorpios.readthedocs.io/en/latest/
	https://github.com/DyogenIBENS/SCORPIOS#table-of-content
Installation	https://github.com/DyogenIBENS/SCORPIOS#installation
Installing conda	https://github.com/DyogenIBENS/SCORPIOS#installing-conda
Installing SCORPiOs	https://github.com/DyogenIBENS/SCORPIOS#installing-scorpios
Usage	https://github.com/DyogenIBENS/SCORPIOS#usage
Setting up your working environment for SCORPiOs	https://github.com/DyogenIBENS/SCORPIOS#setting-up-your-working-environment-for-scorpios
Running SCORPiOs on example data	https://github.com/DyogenIBENS/SCORPIOS#running-scorpios-on-example-data
Example 1: Simple SCORPiOs run	https://github.com/DyogenIBENS/SCORPIOS#example-1-simple-scorpios-run
Example 2: Iterative SCORPiOs run	https://github.com/DyogenIBENS/SCORPIOS#example-2-iterative-scorpios-run
Running SCORPiOS on your data	https://github.com/DyogenIBENS/SCORPIOS#running-scorpios-on-your-data
Preparing your configuration file	https://github.com/DyogenIBENS/SCORPIOS#preparing-your-configuration-file
Running SCORPiOs	https://github.com/DyogenIBENS/SCORPIOS#running-scorpios
Authors	https://github.com/DyogenIBENS/SCORPIOS#authors
License	https://github.com/DyogenIBENS/SCORPIOS#license
References	https://github.com/DyogenIBENS/SCORPIOS#references
	https://github.com/DyogenIBENS/SCORPIOS#installation
	https://github.com/DyogenIBENS/SCORPIOS#installing-conda
here	https://docs.conda.io/en/latest/miniconda.html
	https://github.com/DyogenIBENS/SCORPIOS#installing-scorpios
Mamba	https://github.com/mamba-org/mamba
	https://github.com/DyogenIBENS/SCORPIOS#updating-scorpios-conda-environment
	https://github.com/DyogenIBENS/SCORPIOS#usage
	https://github.com/DyogenIBENS/SCORPIOS#setting-up-your-working-environment-for-scorpios
	https://github.com/DyogenIBENS/SCORPIOS#running-scorpios-on-example-data
	https://github.com/DyogenIBENS/SCORPIOS#example-1-simple-scorpios-run
config_example.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example.yaml
data/example/	https://github.com/DyogenIBENS/SCORPIOS/blob/master/data/example
Snakemake documentation	https://snakemake.readthedocs.io/en/stable/
	https://github.com/DyogenIBENS/SCORPIOS#example-2-iterative-scorpios-run
	https://github.com/DyogenIBENS/SCORPIOS#running-scorpios-on-your-data
	https://github.com/DyogenIBENS/SCORPIOS#preparing-your-configuration-file
config_example.yaml	https://github.com/DyogenIBENS/SCORPIOS/blob/master/config_example.yaml
	https://github.com/DyogenIBENS/SCORPIOS#running-scorpios
	https://github.com/DyogenIBENS/SCORPIOS#authors
	https://github.com/DyogenIBENS/SCORPIOS#license
LICENSE GPLv3	https://github.com/DyogenIBENS/SCORPIOS/blob/master/LICENSE.txt
	https://github.com/DyogenIBENS/SCORPIOS#references
ProfileNJ	https://github.com/maclandrol/profileNJ
RAxML	https://github.com/stamatak/standard-RAxML
PhyML	http://www.atgc-montpellier.fr/phyml/
TreeBeST	https://github.com/Ensembl/treebest
CONSEL	https://github.com/shimo-lab/consel
Readme	https://github.com/DyogenIBENS/SCORPIOS#readme-ov-file
GPL-3.0 license	https://github.com/DyogenIBENS/SCORPIOS#GPL-3.0-1-ov-file
Please reload this page	https://github.com/DyogenIBENS/SCORPIOS
Activity	https://github.com/DyogenIBENS/SCORPIOS/activity
3 forks	https://github.com/DyogenIBENS/SCORPIOS/forks
Report repository	https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDyogenIBENS%2FSCORPIOS&report=DyogenIBENS+%28user%29
Releases	https://github.com/DyogenIBENS/SCORPIOS/releases
5 tags	https://github.com/DyogenIBENS/SCORPIOS/tags
Packages 0	https://github.com/users/DyogenIBENS/packages?repo_name=SCORPIOS
Please reload this page	https://github.com/DyogenIBENS/SCORPIOS
Please reload this page	https://github.com/DyogenIBENS/SCORPIOS
Contributors	https://github.com/DyogenIBENS/SCORPIOS/graphs/contributors
Please reload this page	https://github.com/DyogenIBENS/SCORPIOS
Python 97.0%	https://github.com/DyogenIBENS/SCORPIOS/search?l=python
Shell 2.6%	https://github.com/DyogenIBENS/SCORPIOS/search?l=shell
R 0.4%	https://github.com/DyogenIBENS/SCORPIOS/search?l=r
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.