René's URL Explorer Experiment


Title: GitHub - DessimozLab/fold_tree: snakemake pipeline for creating trees from sequence sets

Open Graph Title: GitHub - DessimozLab/fold_tree: snakemake pipeline for creating trees from sequence sets

X Title: GitHub - DessimozLab/fold_tree: snakemake pipeline for creating trees from sequence sets

Description: snakemake pipeline for creating trees from sequence sets - DessimozLab/fold_tree

Open Graph Description: snakemake pipeline for creating trees from sequence sets - DessimozLab/fold_tree

X Description: snakemake pipeline for creating trees from sequence sets - DessimozLab/fold_tree

Opengraph URL: https://github.com/DessimozLab/fold_tree

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:647e8de0-689d-1e29-bdd6-849e26f81959
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC6F2:6E8AA:2DF762A:3BCA10D:6992BE2B
html-safe-nonce9e51646cddef48a424881cc3d61c93397d3e12d59acc15b301d90b5e5db1b814
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDNkYyOjZFOEFBOjJERjc2MkE6M0JDQTEwRDo2OTkyQkUyQiIsInZpc2l0b3JfaWQiOiI1NjEwNjg2NDM1NTI3NzE2MjciLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmacf627df7e7e4f5ba27b87a5b1e553fc2a1f1a5d5f628ee211363126b5ae4e0f44
hovercard-subject-tagrepository:577668473
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/DessimozLab/fold_tree
twitter:imagehttps://opengraph.githubassets.com/f44bd19f804756505654114c587cc1600c7d5ad92264316c478d7ebb57d3196f/DessimozLab/fold_tree
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/f44bd19f804756505654114c587cc1600c7d5ad92264316c478d7ebb57d3196f/DessimozLab/fold_tree
og:image:altsnakemake pipeline for creating trees from sequence sets - DessimozLab/fold_tree
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/DessimozLab/fold_tree git https://github.com/DessimozLab/fold_tree.git
octolytics-dimension-user_id16049503
octolytics-dimension-user_loginDessimozLab
octolytics-dimension-repository_id577668473
octolytics-dimension-repository_nwoDessimozLab/fold_tree
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id577668473
octolytics-dimension-repository_network_root_nwoDessimozLab/fold_tree
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release84dcb133269e3cfe6e0296cc85fbacb92cae92bb
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/DessimozLab/fold_tree#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2Ffold_tree
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2Ffold_tree
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DessimozLab%2Ffold_tree
Reloadhttps://github.com/DessimozLab/fold_tree
Reloadhttps://github.com/DessimozLab/fold_tree
Reloadhttps://github.com/DessimozLab/fold_tree
DessimozLab https://github.com/DessimozLab
fold_treehttps://github.com/DessimozLab/fold_tree
snakemake-workflows/snakemake-workflow-templatehttps://github.com/snakemake-workflows/snakemake-workflow-template
Notifications https://github.com/login?return_to=%2FDessimozLab%2Ffold_tree
Fork 17 https://github.com/login?return_to=%2FDessimozLab%2Ffold_tree
Star 98 https://github.com/login?return_to=%2FDessimozLab%2Ffold_tree
MIT license https://github.com/DessimozLab/fold_tree/blob/main/LICENSE
98 stars https://github.com/DessimozLab/fold_tree/stargazers
17 forks https://github.com/DessimozLab/fold_tree/forks
Branches https://github.com/DessimozLab/fold_tree/branches
Tags https://github.com/DessimozLab/fold_tree/tags
Activity https://github.com/DessimozLab/fold_tree/activity
Star https://github.com/login?return_to=%2FDessimozLab%2Ffold_tree
Notifications https://github.com/login?return_to=%2FDessimozLab%2Ffold_tree
Code https://github.com/DessimozLab/fold_tree
Issues 5 https://github.com/DessimozLab/fold_tree/issues
Pull requests 0 https://github.com/DessimozLab/fold_tree/pulls
Actions https://github.com/DessimozLab/fold_tree/actions
Projects 0 https://github.com/DessimozLab/fold_tree/projects
Security 0 https://github.com/DessimozLab/fold_tree/security
Insights https://github.com/DessimozLab/fold_tree/pulse
Code https://github.com/DessimozLab/fold_tree
Issues https://github.com/DessimozLab/fold_tree/issues
Pull requests https://github.com/DessimozLab/fold_tree/pulls
Actions https://github.com/DessimozLab/fold_tree/actions
Projects https://github.com/DessimozLab/fold_tree/projects
Security https://github.com/DessimozLab/fold_tree/security
Insights https://github.com/DessimozLab/fold_tree/pulse
Brancheshttps://github.com/DessimozLab/fold_tree/branches
Tagshttps://github.com/DessimozLab/fold_tree/tags
https://github.com/DessimozLab/fold_tree/branches
https://github.com/DessimozLab/fold_tree/tags
416 Commitshttps://github.com/DessimozLab/fold_tree/commits/main/
https://github.com/DessimozLab/fold_tree/commits/main/
.github/workflowshttps://github.com/DessimozLab/fold_tree/tree/main/.github/workflows
.github/workflowshttps://github.com/DessimozLab/fold_tree/tree/main/.github/workflows
.ipynb_checkpointshttps://github.com/DessimozLab/fold_tree/tree/main/.ipynb_checkpoints
.ipynb_checkpointshttps://github.com/DessimozLab/fold_tree/tree/main/.ipynb_checkpoints
.templatehttps://github.com/DessimozLab/fold_tree/tree/main/.template
.templatehttps://github.com/DessimozLab/fold_tree/tree/main/.template
3diphy @ 87d4a3fhttps://github.com/nmatzke/3diphy/tree/87d4a3f59417658b9171677a0fec78796402be78
3diphy @ 87d4a3fhttps://github.com/nmatzke/3diphy/tree/87d4a3f59417658b9171677a0fec78796402be78
A-pro @ 5b16f68https://github.com/chaoszhang/A-pro/tree/5b16f68aa504922edde64aa99d601e12522f562a
A-pro @ 5b16f68https://github.com/chaoszhang/A-pro/tree/5b16f68aa504922edde64aa99d601e12522f562a
CATH_datahttps://github.com/DessimozLab/fold_tree/tree/main/CATH_data
CATH_datahttps://github.com/DessimozLab/fold_tree/tree/main/CATH_data
Protein-comparison-toolhttps://github.com/DessimozLab/fold_tree/tree/main/Protein-comparison-tool
Protein-comparison-toolhttps://github.com/DessimozLab/fold_tree/tree/main/Protein-comparison-tool
docshttps://github.com/DessimozLab/fold_tree/tree/main/docs
docshttps://github.com/DessimozLab/fold_tree/tree/main/docs
docsourcehttps://github.com/DessimozLab/fold_tree/tree/main/docsource
docsourcehttps://github.com/DessimozLab/fold_tree/tree/main/docsource
exampleshttps://github.com/DessimozLab/fold_tree/tree/main/examples
exampleshttps://github.com/DessimozLab/fold_tree/tree/main/examples
figureshttps://github.com/DessimozLab/fold_tree/tree/main/figures
figureshttps://github.com/DessimozLab/fold_tree/tree/main/figures
foldseekhttps://github.com/DessimozLab/fold_tree/tree/main/foldseek
foldseekhttps://github.com/DessimozLab/fold_tree/tree/main/foldseek
madroothttps://github.com/DessimozLab/fold_tree/tree/main/madroot
madroothttps://github.com/DessimozLab/fold_tree/tree/main/madroot
mafftmathttps://github.com/DessimozLab/fold_tree/tree/main/mafftmat
mafftmathttps://github.com/DessimozLab/fold_tree/tree/main/mafftmat
notebookshttps://github.com/DessimozLab/fold_tree/tree/main/notebooks
notebookshttps://github.com/DessimozLab/fold_tree/tree/main/notebooks
python-phylopic @ 6d3f275https://github.com/bendmorris/python-phylopic/tree/6d3f2753c6835cb2b85415d8df9f5ea664daf8b7
python-phylopic @ 6d3f275https://github.com/bendmorris/python-phylopic/tree/6d3f2753c6835cb2b85415d8df9f5ea664daf8b7
slurmsimple @ 962731fhttps://github.com/jdblischak/smk-simple-slurm/tree/962731f46784ca9867b124904703658785747066
slurmsimple @ 962731fhttps://github.com/jdblischak/smk-simple-slurm/tree/962731f46784ca9867b124904703658785747066
srchttps://github.com/DessimozLab/fold_tree/tree/main/src
srchttps://github.com/DessimozLab/fold_tree/tree/main/src
testdatahttps://github.com/DessimozLab/fold_tree/tree/main/testdata
testdatahttps://github.com/DessimozLab/fold_tree/tree/main/testdata
workflowhttps://github.com/DessimozLab/fold_tree/tree/main/workflow
workflowhttps://github.com/DessimozLab/fold_tree/tree/main/workflow
.gitignorehttps://github.com/DessimozLab/fold_tree/blob/main/.gitignore
.gitignorehttps://github.com/DessimozLab/fold_tree/blob/main/.gitignore
.gitmoduleshttps://github.com/DessimozLab/fold_tree/blob/main/.gitmodules
.gitmoduleshttps://github.com/DessimozLab/fold_tree/blob/main/.gitmodules
.snakemake-workflow-catalog.ymlhttps://github.com/DessimozLab/fold_tree/blob/main/.snakemake-workflow-catalog.yml
.snakemake-workflow-catalog.ymlhttps://github.com/DessimozLab/fold_tree/blob/main/.snakemake-workflow-catalog.yml
LICENSEhttps://github.com/DessimozLab/fold_tree/blob/main/LICENSE
LICENSEhttps://github.com/DessimozLab/fold_tree/blob/main/LICENSE
README.mdhttps://github.com/DessimozLab/fold_tree/blob/main/README.md
README.mdhttps://github.com/DessimozLab/fold_tree/blob/main/README.md
__init__.pyhttps://github.com/DessimozLab/fold_tree/blob/main/__init__.py
__init__.pyhttps://github.com/DessimozLab/fold_tree/blob/main/__init__.py
all_hog_levels.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels.sh
all_hog_levels.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels.sh
all_hog_levels_BM.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_BM.sh
all_hog_levels_BM.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_BM.sh
all_hog_levels_BM_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_BM_unfiltered.sh
all_hog_levels_BM_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_BM_unfiltered.sh
all_hog_levels_ML.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_ML.sh
all_hog_levels_ML.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_ML.sh
all_hog_levels_ML_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_ML_unfiltered.sh
all_hog_levels_ML_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_ML_unfiltered.sh
all_hog_levels_Stats_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_Stats_unfiltered.sh
all_hog_levels_Stats_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_Stats_unfiltered.sh
all_hog_levels_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_unfiltered.sh
all_hog_levels_unfiltered.shhttps://github.com/DessimozLab/fold_tree/blob/main/all_hog_levels_unfiltered.sh
foldtree_logo.pnghttps://github.com/DessimozLab/fold_tree/blob/main/foldtree_logo.png
foldtree_logo.pnghttps://github.com/DessimozLab/fold_tree/blob/main/foldtree_logo.png
foldtreetcs_corrected.pnghttps://github.com/DessimozLab/fold_tree/blob/main/foldtreetcs_corrected.png
foldtreetcs_corrected.pnghttps://github.com/DessimozLab/fold_tree/blob/main/foldtreetcs_corrected.png
pyproject.tomlhttps://github.com/DessimozLab/fold_tree/blob/main/pyproject.toml
pyproject.tomlhttps://github.com/DessimozLab/fold_tree/blob/main/pyproject.toml
runCAT.shhttps://github.com/DessimozLab/fold_tree/blob/main/runCAT.sh
runCAT.shhttps://github.com/DessimozLab/fold_tree/blob/main/runCAT.sh
runCATH.shhttps://github.com/DessimozLab/fold_tree/blob/main/runCATH.sh
runCATH.shhttps://github.com/DessimozLab/fold_tree/blob/main/runCATH.sh
sequences.dndhttps://github.com/DessimozLab/fold_tree/blob/main/sequences.dnd
sequences.dndhttps://github.com/DessimozLab/fold_tree/blob/main/sequences.dnd
setup.cfghttps://github.com/DessimozLab/fold_tree/blob/main/setup.cfg
setup.cfghttps://github.com/DessimozLab/fold_tree/blob/main/setup.cfg
wrong.filehttps://github.com/DessimozLab/fold_tree/blob/main/wrong.file
wrong.filehttps://github.com/DessimozLab/fold_tree/blob/main/wrong.file
READMEhttps://github.com/DessimozLab/fold_tree
MIT licensehttps://github.com/DessimozLab/fold_tree
https://github.com/DessimozLab/fold_tree/blob/main/foldtree_logo.png
https://github.com/DessimozLab/fold_tree#snakemake-workflow-fold_tree
https://snakemake.github.io
https://www.nature.com/articles/s41594-025-01649-8https://www.nature.com/articles/s41594-025-01649-8
https://doi.org/10.1038/s41594-025-01649-8https://doi.org/10.1038/s41594-025-01649-8
https://github.com/DessimozLab/fold_tree#try-it-out-on-collab
https://colab.research.google.com/github/DessimozLab/fold_tree/blob/main/notebooks/Foldtree.ipynbhttps://colab.research.google.com/github/DessimozLab/fold_tree/blob/main/notebooks/Foldtree.ipynb
https://github.com/DessimozLab/fold_tree#running-the-pipeline
https://snakemake.readthedocs.io/en/stable/getting_started/installation.htmlhttps://snakemake.readthedocs.io/en/stable/getting_started/installation.html
https://github.com/DessimozLab/fold_tree#repo-contents
https://github.com/DessimozLab/fold_tree#benchmarking-experiments
https://doi.org/10.5281/zenodo.8346286https://doi.org/10.5281/zenodo.8346286
Readme https://github.com/DessimozLab/fold_tree#readme-ov-file
MIT license https://github.com/DessimozLab/fold_tree#MIT-1-ov-file
Please reload this pagehttps://github.com/DessimozLab/fold_tree
Activityhttps://github.com/DessimozLab/fold_tree/activity
Custom propertieshttps://github.com/DessimozLab/fold_tree/custom-properties
98 starshttps://github.com/DessimozLab/fold_tree/stargazers
8 watchinghttps://github.com/DessimozLab/fold_tree/watchers
17 forkshttps://github.com/DessimozLab/fold_tree/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDessimozLab%2Ffold_tree&report=DessimozLab+%28user%29
Releases 3https://github.com/DessimozLab/fold_tree/releases
1.0.0 Latest Feb 6, 2026 https://github.com/DessimozLab/fold_tree/releases/tag/v1.0.0
+ 2 releaseshttps://github.com/DessimozLab/fold_tree/releases
Packages 0https://github.com/orgs/DessimozLab/packages?repo_name=fold_tree
Please reload this pagehttps://github.com/DessimozLab/fold_tree
Contributors 5https://github.com/DessimozLab/fold_tree/graphs/contributors
Please reload this pagehttps://github.com/DessimozLab/fold_tree
Jupyter Notebook 99.4% https://github.com/DessimozLab/fold_tree/search?l=jupyter-notebook
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.