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Title: GitHub - DeepTrackAI/DeepTrack2: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

Open Graph Title: GitHub - DeepTrackAI/DeepTrack2: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

X Title: GitHub - DeepTrackAI/DeepTrack2: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

Description: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. - DeepTrackAI/DeepTrack2

Open Graph Description: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. - DeepTrackAI/DeepTrack2

X Description: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. - DeepTrackAI/DeepTrack2

Opengraph URL: https://github.com/DeepTrackAI/DeepTrack2

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https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/DeepTrack2-logo.png?raw=true
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https://doi.org/10.1063/5.0034891
Installationhttps://github.com/DeepTrackAI/DeepTrack2#installation
Getting Startedhttps://github.com/DeepTrackAI/DeepTrack2#getting-started
Exampleshttps://github.com/DeepTrackAI/DeepTrack2#examples
Advanced Tutorialshttps://github.com/DeepTrackAI/DeepTrack2#advanced-tutorials
Developer Tutorialshttps://github.com/DeepTrackAI/DeepTrack2#developer-tutorials
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Licensehttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/LICENSE
https://github.com/DeepTrackAI/DeepTrack2#installation
https://github.com/DeepTrackAI/DeepTrack2#getting-started
Introduction to DeepTrack2https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS101_intro.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS101_intro.ipynb
Simulating Different Image Modalitieshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS106_particle_image_modalities.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS106_particle_image_modalities.ipynb
Loading Image Files Using Sourceshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS111_datafiles.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS111_datafiles.ipynb
Tracking a Point Particle with a CNNhttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS121_tracking_particle_cnn.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS121_tracking_particle_cnn.ipynb
Characterizing Aberrations with a CNNhttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS126_characterizing_aberrations_cnn.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS126_characterizing_aberrations_cnn.ipynb
Characterizing Aberrations with Optunahttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS127_characterizing_aberrations_optuna.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS127_characterizing_aberrations_optuna.ipynb
Optunahttps://optuna.org/
Tracking Multiple Particles with a U-Nethttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS131_tracking_multiple_particles_unet.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS131_tracking_multiple_particles_unet.ipynb
Distinguishing Particles with a U-Nethttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS141_distinguishing_particles_in_brightfield.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS141_distinguishing_particles_in_brightfield.ipynb
Unsupervised Object Detectionhttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS151_unsupervised_object_detection_with_lodestar.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS151_unsupervised_object_detection_with_lodestar.ipynb
Fitting Using PyTorch Gradientshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS161_torch_fitting.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS161_torch_fitting.ipynb
Creating Custom Scatterershttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171A_custom_scatterers.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171A_custom_scatterers.ipynb
Creating Custom Scatterers: Bacteriahttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb
https://github.com/DeepTrackAI/DeepTrack2#examples
MNISThttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb
Single Particle Trackinghttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb
https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/SPT-ideal.gif?raw=true
https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/SPT-noisy.gif?raw=true
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb
https://doi.org/10.1364/OPTICA.6.000506
https://doi.org/10.1063/5.0034891
Multi-Particle trackinghttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx213_multi_particle_tracking.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx213_multi_particle_tracking.ipynb
https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/MPT-qdots_1.png?raw=true
Cell Countinghttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx215_cell_counting.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx215_cell_counting.ipynb
LodeSTAR autotracker templatehttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231A_LodeSTAR_autotracker_template.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231A_LodeSTAR_autotracker_template.ipynb
https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/MPT-packed.gif?raw=true
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231A_LodeSTAR_autotracker_template.ipynb
https://doi.org/10.1038/s41467-022-35004-y
LodeSTAR Detecting the Cells in the BF-C2DT-HSC Datasethttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231D_LodeSTAR_track_BF-C2DL-HSC.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231D_LodeSTAR_track_BF-C2DL-HSC.ipynb
LodeSTAR Detecting the Cells in the Fluo-C2DT-Huh7 Datasethttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231E_LodeSTAR_track_Fluo-C2DL-Huh7.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231E_LodeSTAR_track_Fluo-C2DL-Huh7.ipynb
LodeSTAR Detecting the Cells in the PhC-C2DT-PSC Datasethttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231F_LodeSTAR_track_PhC-C2DL-PSC.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231F_LodeSTAR_track_PhC-C2DL-PSC.ipynb
https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/Tracing.gif?raw=true
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx241A_MAGIK_cell_migration_analysis.ipynb
https://doi.org/10.1038/s42256-022-00595-0
https://github.com/DeepTrackAI/DeepTrack2#advanced-tutorials
deeptrack.featureshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT301_features.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT301_features.ipynb
deeptrack.propertieshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT306_properties.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT306_properties.ipynb
deeptrack.imagehttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT311_image.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT311_image.ipynb
deeptrack.scatterershttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT321_scatterers.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT321_scatterers.ipynb
deeptrack.opticshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT323_optics.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT323_optics.ipynb
deeptrack.holographyhttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT324_holography.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT324_holography.ipynb
deeptrack.aberrationshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT325_aberrations.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT325_aberrations.ipynb
deeptrack.noiseshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT327_noises.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT327_noises.ipynb
deeptrack.augmentationshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT329_augmentations.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT329_augmentations.ipynb
deeptrack.sequenceshttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT341_sequences.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT341_sequences.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT381_math.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT383_utils.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT385_statistics.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT_387_types.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT389_elementwise.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT391A_sources.base.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT391B_sources.folder.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT395_extras.radialcenter.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399B_backend.pint_definition.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399C_backend.units.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399D_backend.polynomials.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399E_backend.mie.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399F_backend._config.ipynb
https://github.com/DeepTrackAI/DeepTrack2#developer-tutorials
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV401_overview.ipynb
Style Guidehttps://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV411_style.ipynb
https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV411_style.ipynb
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https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV421_backends.ipynb
https://github.com/DeepTrackAI/DeepTrack2#documentation
https://deeptrackai.github.io/DeepTrack2https://deeptrackai.github.io/DeepTrack2
https://github.com/DeepTrackAI/DeepTrack2#cite-us
https://pubs.aip.org/aip/apr/article/8/1/011310/238663https://pubs.aip.org/aip/apr/article/8/1/011310/238663
https://nostarch.com/deep-learning-crash-coursehttps://nostarch.com/deep-learning-crash-course
https://www.nature.com/articles/s41467-022-35004-yhttps://www.nature.com/articles/s41467-022-35004-y
https://www.nature.com/articles/s42256-022-00595-0https://www.nature.com/articles/s42256-022-00595-0
https://doi.org/10.1364/OPTICA.6.000506https://doi.org/10.1364/OPTICA.6.000506
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