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Title: [Docker] Simplify and modernize Dockerfile by deruyter92 · Pull Request #3290 · DeepLabCut/DeepLabCut · GitHub

Open Graph Title: [Docker] Simplify and modernize Dockerfile by deruyter92 · Pull Request #3290 · DeepLabCut/DeepLabCut

X Title: [Docker] Simplify and modernize Dockerfile by deruyter92 · Pull Request #3290 · DeepLabCut/DeepLabCut

Description: This PR is part 1 of updating the docker setup and only entails the Dockerfiles and how we build them. The deeplabcut-docker is also updated, but that is discussed separately in PR #3291 to avoid mixing topics. adresses #3282, #3285 Motivation Currently we have many dockerfiles with overlapping (or functionally identical) purpose. This PR replaces that with a single Dockerfile, which is easier to maintain and more transparent for users. This PR simplifies the variety of image tags to a plain latest, latest-jupyter and 3.0rc14-core-cuda12.4 or similar. cuda12.4 is kept as default which should run on basically most machines from the last 5 years (including newer ones thanks to backward compatibility). Older DeepLabCut (pre-)releases remain on DockerHub with the appropriate tag. is dropped from the name, since all were using the same. base is dropped as image version since it is equivalent to core. cuda 12.1 is dropped as default, and cuda11.8 will remain on DockerHub to support those with legacy hardware. Images were not strictly matching the PyPI versions. This is changed in this PR for transparency. Building docker images was done via (somewhat fragile) shell scripts. This PR replaces that with CI-friendly builds using Docker bake / buildx The tools for Dockerfiles (targeting Docker users) and the deeplabcut-docker package (for deeplabcut-docker developers) was not clearly separated. The package is now moved to its own subdirectory. Changes Single multi-stage docker/Dockerfile: replaces separate Dockerfile.base / core / jupyter / test. Versioned tags like {version}-core-cuda{CUDA} (no cudnn suffix in bake tags). pip install "deeplabcut[modelzoo,wandb]==${DEEPLABCUT_VERSION}" instead of git main Buildx bake defines core + jupyter, shared build-args MARK_LATEST parameter to flag optional latest / latest-jupyter tag. docker/docker-bake.hcl instead of docker/build.sh move deeplabcut-docker package to its own subdirectory, separating it from the dockerfile logic. Not included: optional: add CI workflow for building docker images on release (should be easy to add now). Can be added in a separate PR.

Open Graph Description: This PR is part 1 of updating the docker setup and only entails the Dockerfiles and how we build them. The deeplabcut-docker is also updated, but that is discussed separately in PR #3291 to avoid ...

X Description: This PR is part 1 of updating the docker setup and only entails the Dockerfiles and how we build them. The deeplabcut-docker is also updated, but that is discussed separately in PR #3291 to avoid ...

Opengraph URL: https://github.com/DeepLabCut/DeepLabCut/pull/3290

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9f0ff5d move deeplabcut-docker package to separate subdirectory deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/9f0ff5df4fe851b78b4b3a72d8b11000ec5fb9a6
26ea5b6 update dockerfile: add single clean dockerfile that replaces the mult… deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/26ea5b615f364ceef4d6032d1393c46edea61c00
a80e426 docker: replace build script with docker bake buildx hcl file deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/a80e426406b70f19f6d542cacafc595deda25f0d
0748560 add dockerignore file deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/0748560e7bf369e108838621481dcbce0d0a3110
7547079 docker update README: new dockerfile naming and buildx commands deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/7547079bcd87c581b3813fca2d32484ec6e5cdb2
04646e6 Update docker/README.md deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/04646e6c3ba0a12b148eccd072ed610ccb12a227
99d31cd Update docker/Dockerfile deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/99d31cd6d856e5945cbf6b8e4296fce80fa27f40
ead4b7c Update dockerfile: fix pretrained weights directory permission deruyter92 Apr 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/ead4b7c19f3a81b115c5b2033250cad914258fd7
ff549d1 dockerfile: add healthcheck for jupyter exposed port deruyter92 Apr 28, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/ff549d1cf8985a5dc37ac7ffff3ca5a4ff1d3a11
8d45764 dockerfile: add override jupyter token option + port-expose warning i… deruyter92 Apr 28, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/8d4576474b5fc2fd510978f6089b93fdc114ecdd
b73c99f dockerfile: add comment regarding root-user deruyter92 Apr 28, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/b73c99f0ebb5c9ac428fa03cb389af2dfcdcaacc
551237b [Docker 2] update `deeplabcut-docker` package (#3291) deruyter92 May 15, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/551237bd45825570254137703cb783758b93c762
55f13a4 Merge branch 'main' into jaap/update_docker C-Achard May 15, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/3290/commits/55f13a4d31713fbdcf9c1b1765d86ae6f3209bba
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