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Title: Add ctd integration test by maximpavliv · Pull Request #3040 · DeepLabCut/DeepLabCut · GitHub

Open Graph Title: Add ctd integration test by maximpavliv · Pull Request #3040 · DeepLabCut/DeepLabCut

X Title: Add ctd integration test by maximpavliv · Pull Request #3040 · DeepLabCut/DeepLabCut

Description: Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans - Add ctd integration test by maximpavliv · Pull Request #3040 · DeepLabCut/DeepLabCut

Open Graph Description: This pull request adds a CTD model to the integration-tested models in examples/testscript_pytorch_multi_animal.py . To pass the test successfully, a few fixes have been done to the CTD pipeline: ...

X Description: This pull request adds a CTD model to the integration-tested models in examples/testscript_pytorch_multi_animal.py . To pass the test successfully, a few fixes have been done to the CTD pipeline: ...

Opengraph URL: https://github.com/DeepLabCut/DeepLabCut/pull/3040

X: @github

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Domain: github.com

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og:image:altThis pull request adds a CTD model to the integration-tested models in examples/testscript_pytorch_multi_animal.py . To pass the test successfully, a few fixes have been done to the CTD pipeline: ...
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maximpavlivhttps://github.com/maximpavliv
mainhttps://github.com/DeepLabCut/DeepLabCut/tree/main
maxim/add_ctd_integration_testhttps://github.com/DeepLabCut/DeepLabCut/tree/maxim/add_ctd_integration_test
Conversationhttps://github.com/DeepLabCut/DeepLabCut/pull/3040
Commits44 (44)https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits
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Files changedhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/files
Add ctd integration testhttps://github.com/DeepLabCut/DeepLabCut/pull/3040#top
maximpavlivhttps://github.com/maximpavliv
mainhttps://github.com/DeepLabCut/DeepLabCut/tree/main
maxim/add_ctd_integration_testhttps://github.com/DeepLabCut/DeepLabCut/tree/maxim/add_ctd_integration_test
https://github.com/maximpavliv
maximpavlivhttps://github.com/maximpavliv
Jul 1, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#issue-3192876657
Improve CTD preprocessors pipeline #2984https://github.com/DeepLabCut/DeepLabCut/pull/2984
Fix deeplabcut.analyze_images() with CTD model #2990https://github.com/DeepLabCut/DeepLabCut/pull/2990
Please reload this pagehttps://github.com/DeepLabCut/DeepLabCut/pull/3040
maximpavlivhttps://github.com/maximpavliv
July 1, 2025 16:47https://github.com/DeepLabCut/DeepLabCut/pull/3040#commits-pushed-eacbdaf
https://github.com/maximpavliv
get_conditions_provider_for_video: load assemblies instead of full pi…https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/eacbdafb74fa81321fa221d5900ab9613ca5da42
eacbdafhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/eacbdafb74fa81321fa221d5900ab9613ca5da42
https://github.com/maximpavliv
Fix CondProvider.load_conditions_pickle()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/66f1da87adda3fa904d90a66b91d570d51cd978a
66f1da8https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/66f1da87adda3fa904d90a66b91d570d51cd978a
https://github.com/maximpavliv
Fix FilterLowConfidencePoseshttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/b5f341b6294077324504bfc8cf3368866476e581
b5f341bhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/b5f341b6294077324504bfc8cf3368866476e581
https://github.com/maximpavliv
Fix create_video_with_all_detections (bboxes generated by CTD inference)https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/df805ecc8cb1626ed1b1fd3b26a13c4ec8829654
df805echttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/df805ecc8cb1626ed1b1fd3b26a13c4ec8829654
https://github.com/maximpavliv
PadOutputs: normalize output formathttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/8282f4dc8dc20f9fe98cb68423d1c0ce6b849873
8282f4dhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/8282f4dc8dc20f9fe98cb68423d1c0ce6b849873
https://github.com/maximpavliv
Add CTD model to integration testshttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/a098c637bc762ae048363926bc5da3541455636b
a098c63https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/a098c637bc762ae048363926bc5da3541455636b
https://github.com/maximpavliv
maximpavlivhttps://github.com/maximpavliv
CTD https://github.com/DeepLabCut/DeepLabCut/issues?q=state%3Aopen%20label%3ACTD
Jul 1, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#event-18413642401
https://github.com/AlexEMG
AlexEMGhttps://github.com/AlexEMG
Jul 2, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#issuecomment-3026656205
#3001https://github.com/DeepLabCut/DeepLabCut/issues/3001
Please reload this pagehttps://github.com/DeepLabCut/DeepLabCut/pull/3040
https://github.com/AlexEMG
AlexEMGhttps://github.com/AlexEMG
DLC3.0🔥 https://github.com/DeepLabCut/DeepLabCut/issues?q=state%3Aopen%20label%3ADLC3.0%F0%9F%94%A5
Jul 2, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#event-18425386399
maximpavlivhttps://github.com/maximpavliv
July 10, 2025 16:58https://github.com/DeepLabCut/DeepLabCut/pull/3040#commits-pushed-2bd069f
https://github.com/maximpavliv
Merge branch 'main' into maxim/add_ctd_integration_testhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/2bd069fefcb6d29f492eb7f9fce4890993574ac6
2bd069fhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/2bd069fefcb6d29f492eb7f9fce4890993574ac6
https://github.com/maximpavliv
Formattinghttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/9f04c61c225400e9ec92922837bc7258ce03328c
9f04c61https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/9f04c61c225400e9ec92922837bc7258ce03328c
https://github.com/AlexEMG
AlexEMGhttps://github.com/AlexEMG
Jul 12, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#issuecomment-3065029766
Please reload this pagehttps://github.com/DeepLabCut/DeepLabCut/pull/3040
maximpavlivhttps://github.com/maximpavliv
July 21, 2025 14:10https://github.com/DeepLabCut/DeepLabCut/pull/3040#commits-pushed-2abf37c
https://github.com/maximpavliv
Trim superanimal_humanbody.yaml default project confighttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/2abf37cf0656725ef4227d81be388ed47b8b072a
2abf37chttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/2abf37cf0656725ef4227d81be388ed47b8b072a
https://github.com/maximpavliv
Trim superanimal_humanbody_colorshttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/a1a6be126ad56e038807f835dd5f6f79c62308b8
a1a6be1https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/a1a6be126ad56e038807f835dd5f6f79c62308b8
https://github.com/maximpavliv
Correct get_checkpoint_epochhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/dfbce1d61fa24ac735ca7760ccf3c9a5244e34c2
dfbce1dhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/dfbce1d61fa24ac735ca7760ccf3c9a5244e34c2
https://github.com/maximpavliv
Add rtmpose_x modelzoo model confighttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/1432a73ac5a72fa4ca01d8c8fdfdf7549922cf41
1432a73https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/1432a73ac5a72fa4ca01d8c8fdfdf7549922cf41
https://github.com/maximpavliv
Add FilteredDetectorhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/a4d74ccdb2e3c7533bd9d5f6f09f3fd91a07ef63
a4d74cchttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/a4d74ccdb2e3c7533bd9d5f6f09f3fd91a07ef63
https://github.com/maximpavliv
Add get_filtered_coco_detector_inference_runner() methodhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/0cbfe59fd5193dac13d1fb14102bb03f530345c7
0cbfe59https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/0cbfe59fd5193dac13d1fb14102bb03f530345c7
https://github.com/maximpavliv
Add ScaleToUnitRange transformhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/84b230ebe3e3f398a0ddf07e283d50c5729907be
84b230ehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/84b230ebe3e3f398a0ddf07e283d50c5729907be
https://github.com/maximpavliv
Superanimal humanbody inference: use filtered detector runnerhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/c4c1318317c6d1d6ad42845dff3766f775ce1bde
c4c1318https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/c4c1318317c6d1d6ad42845dff3766f775ce1bde
https://github.com/maximpavliv
ModelZoo tab: make humanbody general casehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/dc511cdc8e2a785311a467a99c3e77a9d99a8928
dc511cdhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/dc511cdc8e2a785311a467a99c3e77a9d99a8928
https://github.com/maximpavliv
get_super_animal_scorer(): add torchvision_detector_name arghttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/479cc66c4698c1ae63d9756f1c4b77e5ce482832
479cc66https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/479cc66c4698c1ae63d9756f1c4b77e5ce482832
https://github.com/maximpavliv
Remove superanimal_humanbody_video_inference.py modulehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/6a14584148a8e29eb378630a91180f90684412de
6a14584https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/6a14584148a8e29eb378630a91180f90684412de
https://github.com/maximpavliv
Regularize get_super_animal_model_config_path()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/677481228433dd27f50a193004edbd562bbfc93c
6774812https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/677481228433dd27f50a193004edbd562bbfc93c
https://github.com/maximpavliv
Regularize load_super_animal_config()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/424ac92941fbdf30ff61c432a2b6575fc3836ca6
424ac92https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/424ac92941fbdf30ff61c432a2b6575fc3836ca6
https://github.com/maximpavliv
Regularize download_super_animal_snapshot()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/04438f844ea1b53e2b23a50e25866158ad606a18
04438f8https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/04438f844ea1b53e2b23a50e25866158ad606a18
https://github.com/maximpavliv
update_config(): superanimal_humanbody - compatiblehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/256977bfa8b7f2b15c3528df8aa0724fd924a7c8
256977bhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/256977bfa8b7f2b15c3528df8aa0724fd924a7c8
https://github.com/maximpavliv
Revert video_inference()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/8d4cf202a1bd2bdd65ab0e85d92f9deb08356557
8d4cf20https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/8d4cf202a1bd2bdd65ab0e85d92f9deb08356557
https://github.com/maximpavliv
Revert create_df_from_prediction()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/edf4f9ddf7c00c22cfb01418f479cd58abc39a29
edf4f9dhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/edf4f9ddf7c00c22cfb01418f479cd58abc39a29
https://github.com/maximpavliv
Restore CTDInferenceRunnerhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/cded5817dde33eb89b1f8a9571115549ad436400
cded581https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/cded5817dde33eb89b1f8a9571115549ad436400
maximpavlivhttps://github.com/maximpavliv
July 21, 2025 19:05https://github.com/DeepLabCut/DeepLabCut/pull/3040#commits-pushed-7eaf923
https://github.com/maximpavliv
Remove TorchvisionDetectorInferenceRunnerhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/7eaf923a015384ae895e4404ad766a8e90e68309
7eaf923https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/7eaf923a015384ae895e4404ad766a8e90e68309
https://github.com/maximpavliv
Revert DetectorInferenceRunnerhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/feb34d13f7ffc4280a6f2618e962be66f601acc5
feb34d1https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/feb34d13f7ffc4280a6f2618e962be66f601acc5
https://github.com/maximpavliv
superanimal_analyze_images() - make humanbody compatiblehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/711a47eb7d9e7ab8e7aa4812c68fd5f74f313074
711a47ehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/711a47eb7d9e7ab8e7aa4812c68fd5f74f313074
https://github.com/maximpavliv
Revert build_predictions_dataframe()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/28e4dd046c7effb2916bc33ea14fbac369d00dc3
28e4dd0https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/28e4dd046c7effb2916bc33ea14fbac369d00dc3
https://github.com/maximpavliv
Revert get_inference_runners()https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/193f935688080d852d959580fc17864b7bca3c73
193f935https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/193f935688080d852d959580fc17864b7bca3c73
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Revert detectors/fasterRCNN.pyhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/613b2ac5ba8b75dce188f42ce49b90457959030a
613b2achttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/613b2ac5ba8b75dce188f42ce49b90457959030a
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Revert detectors/torchvision.pyhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/d848741b7ae73c64475ba588a5109399408cf10d
d848741https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/d848741b7ae73c64475ba588a5109399408cf10d
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Revert base Runnerhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/bba86890a4ed252e48801702f2ab062492ae6668
bba8689https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/bba86890a4ed252e48801702f2ab062492ae6668
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Fix superanimal_humanbody unit testhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/25fa08dfc43dd69db2ee0d94996341bb8ebdd056
25fa08dhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/25fa08dfc43dd69db2ee0d94996341bb8ebdd056
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Disable video adaptation for superanimal_humanbodyhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/425484b5d24c4b2365e10add9b315e998571db77
425484bhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/425484b5d24c4b2365e10add9b315e998571db77
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Fix testscript_superanimal_inference.pyhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/4b04013819ac8f07107b961dd228e6dd7f83a673
4b04013https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/4b04013819ac8f07107b961dd228e6dd7f83a673
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Remove debug printhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/eea470e7f1a2e2f98616d5ed685e2daa3f988ff6
eea470ehttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/eea470e7f1a2e2f98616d5ed685e2daa3f988ff6
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Black formattinghttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/3d47a36e438321a2ef8ef1200c3e440d64bd4673
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Merge branch 'maxim/superanimal_humanbody_filtered_detector' into max…https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/7b50466785b7ecf5e1cc7a9a7c2fc42784653514
7b50466https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/7b50466785b7ecf5e1cc7a9a7c2fc42784653514
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Black formattinghttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/0da592b863b8bca20992735dfc2f1a4a0f953cb6
0da592bhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/0da592b863b8bca20992735dfc2f1a4a0f953cb6
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Jul 31, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#issuecomment-3140026460
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#3066https://github.com/DeepLabCut/DeepLabCut/pull/3066
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July 31, 2025 13:48https://github.com/DeepLabCut/DeepLabCut/pull/3040#event-18920070682
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FilterLowConfidencePoses: fix default aggregate_funchttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/6c0dc12409ae9dd22ea85a3f8d866e411260141d
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Aug 18, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#issuecomment-3197543362
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#3001https://github.com/DeepLabCut/DeepLabCut/issues/3001
FilterLowConfidencePoses processing stagehttps://github.com/DeepLabCut/DeepLabCut/blob/b400ad9bccbc0a992116f2f7b8a9c0844d7d141d/deeplabcut/pose_estimation_pytorch/data/preprocessor.py#L364
separate Pull Requesthttps://github.com/DeepLabCut/DeepLabCut/pull/3076
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September 4, 2025 18:40https://github.com/DeepLabCut/DeepLabCut/pull/3040#commits-pushed-ecd4040
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Merge branch 'main' into maxim/add_ctd_integration_testhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/ecd4040477def7f41bf6a7666ca3416d1641c2be
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Merge branch 'main' into maxim/add_ctd_integration_testhttps://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/e17ac85ad154cdb34628cbf6d2417b544b45db9c
e17ac85https://github.com/DeepLabCut/DeepLabCut/pull/3040/commits/e17ac85ad154cdb34628cbf6d2417b544b45db9c
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Sep 10, 2025https://github.com/DeepLabCut/DeepLabCut/pull/3040#issuecomment-3275972136
#3076https://github.com/DeepLabCut/DeepLabCut/pull/3076
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