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Title: Addition of BUCTD Models by n-poulsen · Pull Request #2952 · DeepLabCut/DeepLabCut · GitHub

Open Graph Title: Addition of BUCTD Models by n-poulsen · Pull Request #2952 · DeepLabCut/DeepLabCut

X Title: Addition of BUCTD Models by n-poulsen · Pull Request #2952 · DeepLabCut/DeepLabCut

Description: Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans - Addition of BUCTD Models by n-poulsen · Pull Request #2952 · DeepLabCut/DeepLabCut

Open Graph Description: BUCTD Pose Estimation Models BUCTD is a state of the art crowded animal (and human) pose estimation algorithm. This PR serves to add this directly to the DeepLabCut code base. Here is the stand alo...

X Description: BUCTD Pose Estimation Models BUCTD is a state of the art crowded animal (and human) pose estimation algorithm. This PR serves to add this directly to the DeepLabCut code base. Here is the stand alo...

Opengraph URL: https://github.com/DeepLabCut/DeepLabCut/pull/2952

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og:image:altBUCTD Pose Estimation Models BUCTD is a state of the art crowded animal (and human) pose estimation algorithm. This PR serves to add this directly to the DeepLabCut code base. Here is the stand alo...
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lucas/buctd_v2https://github.com/DeepLabCut/DeepLabCut/tree/lucas/buctd_v2
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Commits114 (114)https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits
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Addition of BUCTD Modelshttps://github.com/DeepLabCut/DeepLabCut/pull/2952#top
MMathisLabhttps://github.com/MMathisLab
mainhttps://github.com/DeepLabCut/DeepLabCut/tree/main
lucas/buctd_v2https://github.com/DeepLabCut/DeepLabCut/tree/lucas/buctd_v2
https://github.com/n-poulsen
n-poulsenhttps://github.com/n-poulsen
Apr 11, 2025https://github.com/DeepLabCut/DeepLabCut/pull/2952#issue-2987910877
Please reload this pagehttps://github.com/DeepLabCut/DeepLabCut/pull/2952
Herehttps://github.com/amathislab/BUCTD
Rethinking pose estimation in crowds: overcoming the detection information bottleneck and ambiguityhttps://openaccess.thecvf.com/content/ICCV2023/papers/Zhou_Rethinking_Pose_Estimation_in_Crowds_Overcoming_the_Detection_Information_Bottleneck_ICCV_2023_paper.pdf
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Please reload this pagehttps://github.com/DeepLabCut/DeepLabCut/pull/2952
LucZothttps://github.com/LucZot
March 21, 2024 09:58https://github.com/DeepLabCut/DeepLabCut/pull/2952#commits-pushed-b57d849
https://github.com/LucZot
add code of hrnet + coam backbonehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/b57d84958e72b68221ba2c6eef5aafe8ae58bd4b
b57d849https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/b57d84958e72b68221ba2c6eef5aafe8ae58bd4b
https://github.com/LucZot
refactor and finish hrnet+coam integrationhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/06908996f0fad6a7ea2e689df6aa19d342bd399d
0690899https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/06908996f0fad6a7ea2e689df6aa19d342bd399d
https://github.com/LucZot
add ctd configshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/c6e66684e84caf0d5e3b6bda6b7b5402b61d342c
c6e6668https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/c6e66684e84caf0d5e3b6bda6b7b5402b61d342c
https://github.com/n-poulsen
https://github.com/LucZot
initial work on generative samplinghttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/78ebb57082a6a1b5da043e94b00f0bcaac1ea6c8
78ebb57https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/78ebb57082a6a1b5da043e94b00f0bcaac1ea6c8
https://github.com/LucZot
buctd cont Ihttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/4503b87c91e8b336cc34e3a01213cab93ac54740
4503b87https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/4503b87c91e8b336cc34e3a01213cab93ac54740
https://github.com/LucZot
prepare dataloader for loading cond pose with gen samplinghttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/ec4aa8735e74d283c72fa0c0ec9668011ad7df07
ec4aa87https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/ec4aa8735e74d283c72fa0c0ec9668011ad7df07
https://github.com/LucZot
adapt hrnet-coam output to hrnet codehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/6c0cf379b351f9b173aa26b6d93cfc0b1617d1c0
6c0cf37https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/6c0cf379b351f9b173aa26b6d93cfc0b1617d1c0
https://github.com/LucZot
put kpt encoders into moduleshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/704a0c6e41bfd0f688e3fec94a1577e92e007ef0
704a0c6https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/704a0c6e41bfd0f688e3fec94a1577e92e007ef0
https://github.com/LucZot
add kpt encoder to hrnet_coamhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a53ba27ae365c7b251f6adf376d28d901a775a08
a53ba27https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a53ba27ae365c7b251f6adf376d28d901a775a08
https://github.com/LucZot
small additionshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/964dd5c595576e5bd8516662011b704b14aedbff
964dd5chttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/964dd5c595576e5bd8516662011b704b14aedbff
https://github.com/LucZot
init CTD inferencehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/3e85fd1879bf1c67d3af3eabb44c44fadc8d2ad7
3e85fd1https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/3e85fd1879bf1c67d3af3eabb44c44fadc8d2ad7
https://github.com/LucZot
test CTD training - Ihttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/8c94c7b647ca58577cc6c24b72fee8d460cff14d
8c94c7bhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/8c94c7b647ca58577cc6c24b72fee8d460cff14d
https://github.com/LucZot
buctd training!https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/107ea708d6a57bded0d3a12cefeee998a65a43b9
107ea70https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/107ea708d6a57bded0d3a12cefeee998a65a43b9
https://github.com/LucZot
remove one for loop in _get_condition_matrixhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/f8b7fa9d969f906e424b0eb1586c7d2913ce668d
f8b7fa9https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/f8b7fa9d969f906e424b0eb1586c7d2913ce668d
https://github.com/LucZot
optim trials for cond kpt encodinghttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9bb4ae639083274e1d386a09d8a43bcf60d7e14b
9bb4ae6https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9bb4ae639083274e1d386a09d8a43bcf60d7e14b
https://github.com/LucZot
add ctd evaluation based on loaded bu predictionshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/ac29688cd2a79cb9739a6e5114d1828ca30d2285
ac29688https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/ac29688cd2a79cb9739a6e5114d1828ca30d2285
https://github.com/LucZot
use only overlapping individuals for swapping errorhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/bb31cc17f7ebfa1828744de2f55010e4a1e68fad
bb31cc1https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/bb31cc17f7ebfa1828744de2f55010e4a1e68fad
https://github.com/LucZot
add marmoset bu pathhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/ee7918f32eb6e68635d31176aa2030c44210747e
ee7918fhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/ee7918f32eb6e68635d31176aa2030c44210747e
https://github.com/LucZot
Merge branch 'main' into lucas/buctd_integrationhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/b83e8ec03551add7677d9cada45619a10ce80f53
b83e8echttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/b83e8ec03551add7677d9cada45619a10ce80f53
https://github.com/LucZot
scale cond_kpts in collatehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/e769277f8835f41e3d545790648edf06059e2a7a
e769277https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/e769277f8835f41e3d545790648edf06059e2a7a
https://github.com/LucZot
switch back to original function for creating conditional matrixhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/006b13a0361902cc96635ee2f9b9df76569e5e5f
006b13ahttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/006b13a0361902cc96635ee2f9b9df76569e5e5f
https://github.com/LucZot
update benchmark scriptshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/1ccf70593e123ff1298f58b56d05ce40bef17fcd
1ccf705https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/1ccf70593e123ff1298f58b56d05ce40bef17fcd
https://github.com/LucZot
add hflip to internal benchmark scripthttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a4973c9508709169c25de56c612b1bf0933480fa
a4973c9https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a4973c9508709169c25de56c612b1bf0933480fa
https://github.com/LucZot
pad with black pixels instead of context for CTD + add margin for BU-…https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/304f9c2939e8ad1cce3dff82e880b052c47f2355
304f9c2https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/304f9c2939e8ad1cce3dff82e880b052c47f2355
https://github.com/LucZot
add script for testing ctd performance with coco apihttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/0b4be31d8e465ae0dda7171fd18cd5f8885a2af4
0b4be31https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/0b4be31d8e465ae0dda7171fd18cd5f8885a2af4
https://github.com/LucZot
make CTD test inference compatible with previous codehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/c93c1bdc2f9ab5011851add1d80c30de08ad2af6
c93c1bdhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/c93c1bdc2f9ab5011851add1d80c30de08ad2af6
https://github.com/LucZot
add bu name to output path names for CTD test inferencehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9c9ef50ab25cde506a1305eb7d50d5c119adc27d
9c9ef50https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9c9ef50ab25cde506a1305eb7d50d5c119adc27d
https://github.com/LucZot
add bu name to output path names for CTD test inference - fixhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/4de92f9dcca6e6af7d6784c701991db6ba3c399b
4de92f9https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/4de92f9dcca6e6af7d6784c701991db6ba3c399b
https://github.com/LucZot
update BUCTD training with new TD developmentshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/fbbaf13fd743dcd2c4fb1f5b3b0a1d30beeacb7e
fbbaf13https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/fbbaf13fd743dcd2c4fb1f5b3b0a1d30beeacb7e
https://github.com/n-poulsen
merged mainhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/5a432b59192645240c691e9fb1ab174d53ddb18d
5a432b5https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/5a432b59192645240c691e9fb1ab174d53ddb18d
n-poulsenhttps://github.com/n-poulsen
April 11, 2025 11:27https://github.com/DeepLabCut/DeepLabCut/pull/2952#commits-pushed-f54cc47
https://github.com/n-poulsen
update BUCTD colabhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/f54cc47d64ae1e54e3778873967687b217199571
f54cc47https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/f54cc47d64ae1e54e3778873967687b217199571
https://github.com/n-poulsen
fix COLAB renderinghttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/4ff3d95f2f635e824f35e9f2d510025c358c1014
4ff3d95https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/4ff3d95f2f635e824f35e9f2d510025c358c1014
https://github.com/n-poulsen
fix COLAB renderinghttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/bd2d14d4b69ff3980dc4647d471a91ab205c122b
bd2d14dhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/bd2d14d4b69ff3980dc4647d471a91ab205c122b
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fix COLAB renderinghttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/28ff47f5ef6d38612b3e17f3fd37f22123799709
28ff47fhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/28ff47f5ef6d38612b3e17f3fd37f22123799709
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fix pip install in COLABhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a04a9bdd303f72ba357f70992cb9138145c720a6
a04a9bdhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a04a9bdd303f72ba357f70992cb9138145c720a6
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skip notebooks for codespellhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/c42fe22e628f909dcf879126c792772afd326c1d
c42fe22https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/c42fe22e628f909dcf879126c792772afd326c1d
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install deeplabcut with --pre in colabhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/1d92522fc1213bd70b7c17d02bd05a90767602d9
1d92522https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/1d92522fc1213bd70b7c17d02bd05a90767602d9
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fix testshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/b0dae2234c2774fa29fecc772ac1746e40352aac
b0dae22https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/b0dae2234c2774fa29fecc772ac1746e40352aac
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Merge branch 'main' into lucas/buctd_v2https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9696a4b5108769c8b0ef454e48cf8e74da281c8e
9696a4bhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9696a4b5108769c8b0ef454e48cf8e74da281c8e
https://github.com/n-poulsen
fix failing tests on windowshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9eec04226892969316d5826eca66cbe2e5712a54
9eec042https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/9eec04226892969316d5826eca66cbe2e5712a54
https://github.com/n-poulsen
fix tests windowshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a42c61dec317131eaebd2f820db729ffe81d9083
a42c61dhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/a42c61dec317131eaebd2f820db729ffe81d9083
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Apr 12, 2025 https://github.com/DeepLabCut/DeepLabCut/pull/2952#ref-issue-2266781271
Inquiry on Integration Timeline for BUCTD in DeepLabCut amathislab/BUCTD#18 https://github.com/amathislab/BUCTD/issues/18
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Update architectures.mdhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/1d6708913a66dcb1fa462f66ac08447cc6c04351
1d67089https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/1d6708913a66dcb1fa462f66ac08447cc6c04351
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April 14, 2025 10:19https://github.com/DeepLabCut/DeepLabCut/pull/2952#commits-pushed-d6b3f74
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deal with absolute windows pathshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/d6b3f7402320f69592508396056379c9cc9d9187
d6b3f74https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/d6b3f7402320f69592508396056379c9cc9d9187
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Version updatehttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/0fc92a09209b29e401ff228813fb02f61a364d65
0fc92a0https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/0fc92a09209b29e401ff228813fb02f61a364d65
https://github.com/n-poulsen
fix when paths are converted to windowshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/6a1e0a9745bdf410aeeea7d25e3a3556e6864731
6a1e0a9https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/6a1e0a9745bdf410aeeea7d25e3a3556e6864731
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Merge branch 'main' into lucas/buctd_v2https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/3900605fcdcef890c2400d8bf3acc6a1d00975b0
3900605https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/3900605fcdcef890c2400d8bf3acc6a1d00975b0
https://github.com/n-poulsen
fix windows testshttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/fb7c647c8de07fa195badfbb8716fd359f065acb
fb7c647https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/fb7c647c8de07fa195badfbb8716fd359f065acb
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Merge branch 'main' into lucas/buctd_v2https://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/44a54fb2360fcd310dc6a2cc02608c7d3c7cbaa9
44a54fbhttps://github.com/DeepLabCut/DeepLabCut/pull/2952/commits/44a54fb2360fcd310dc6a2cc02608c7d3c7cbaa9
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maximpavlivhttps://github.com/maximpavliv
May 5, 2025 https://github.com/DeepLabCut/DeepLabCut/pull/2952#ref-issue-3017128402
ValueError: Misconfigured conditions in the pytorch_config: None. #2970 https://github.com/DeepLabCut/DeepLabCut/issues/2970
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Fix deeplabcut.analyze_images() with CTD model #2990 https://github.com/DeepLabCut/DeepLabCut/pull/2990
BUCTD and CTD tracking #2987 https://github.com/DeepLabCut/DeepLabCut/issues/2987
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May 21, 2026 https://github.com/DeepLabCut/DeepLabCut/pull/2952#ref-pullrequest-4492645791
Add 3.0 changelog #3340 https://github.com/DeepLabCut/DeepLabCut/pull/3340
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