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| og:image:alt | Structure inpainting and simulation-ready setup for proteins, DNA, RNA, and complexes - DeepFoldProtein/patchr |
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| About | https://github.com/about |
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| Pricing | https://github.com/pricing |
| Sign in | https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDeepFoldProtein%2Fpatchr |
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| Reload | https://github.com/DeepFoldProtein/patchr |
| Reload | https://github.com/DeepFoldProtein/patchr |
| Reload | https://github.com/DeepFoldProtein/patchr |
| DeepFoldProtein | https://github.com/DeepFoldProtein |
| patchr | https://github.com/DeepFoldProtein/patchr |
| Code | https://github.com/DeepFoldProtein/patchr |
| Issues1 (1) | https://github.com/DeepFoldProtein/patchr/issues |
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| https://github.com/DeepFoldProtein/patchr |
| patchr | https://github.com/DeepFoldProtein/patchr |
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| patchr.deepfold.org | https://patchr.deepfold.org |
| Readme | https://github.com/DeepFoldProtein/patchr#readme-ov-file |
| MIT license | https://github.com/DeepFoldProtein/patchr#MIT-1-ov-file |
| Activity | https://github.com/DeepFoldProtein/patchr/activity |
| Custom properties | https://github.com/DeepFoldProtein/patchr/custom-properties |
| 10 forks | https://github.com/DeepFoldProtein/patchr/forks |
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| 215 Commits | https://github.com/DeepFoldProtein/patchr/commits/main/ |
| https://github.com/DeepFoldProtein/patchr/commits/main/ |
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| docs | https://github.com/DeepFoldProtein/patchr/tree/main/docs |
| docs | https://github.com/DeepFoldProtein/patchr/tree/main/docs |
| examples/inpainting | https://github.com/DeepFoldProtein/patchr/tree/main/examples/inpainting |
| examples/inpainting | https://github.com/DeepFoldProtein/patchr/tree/main/examples/inpainting |
| protenix_configs | https://github.com/DeepFoldProtein/patchr/tree/main/protenix_configs |
| protenix_configs | https://github.com/DeepFoldProtein/patchr/tree/main/protenix_configs |
| protenix_runner | https://github.com/DeepFoldProtein/patchr/tree/main/protenix_runner |
| protenix_runner | https://github.com/DeepFoldProtein/patchr/tree/main/protenix_runner |
| scripts | https://github.com/DeepFoldProtein/patchr/tree/main/scripts |
| scripts | https://github.com/DeepFoldProtein/patchr/tree/main/scripts |
| server | https://github.com/DeepFoldProtein/patchr/tree/main/server |
| server | https://github.com/DeepFoldProtein/patchr/tree/main/server |
| src | https://github.com/DeepFoldProtein/patchr/tree/main/src |
| src | https://github.com/DeepFoldProtein/patchr/tree/main/src |
| studio | https://github.com/DeepFoldProtein/patchr/tree/main/studio |
| studio | https://github.com/DeepFoldProtein/patchr/tree/main/studio |
| tests | https://github.com/DeepFoldProtein/patchr/tree/main/tests |
| tests | https://github.com/DeepFoldProtein/patchr/tree/main/tests |
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| Dockerfile | https://github.com/DeepFoldProtein/patchr/blob/main/Dockerfile |
| Dockerfile | https://github.com/DeepFoldProtein/patchr/blob/main/Dockerfile |
| LICENSE | https://github.com/DeepFoldProtein/patchr/blob/main/LICENSE |
| LICENSE | https://github.com/DeepFoldProtein/patchr/blob/main/LICENSE |
| README.md | https://github.com/DeepFoldProtein/patchr/blob/main/README.md |
| README.md | https://github.com/DeepFoldProtein/patchr/blob/main/README.md |
| colab_server.ipynb | https://github.com/DeepFoldProtein/patchr/blob/main/colab_server.ipynb |
| colab_server.ipynb | https://github.com/DeepFoldProtein/patchr/blob/main/colab_server.ipynb |
| pyproject.toml | https://github.com/DeepFoldProtein/patchr/blob/main/pyproject.toml |
| pyproject.toml | https://github.com/DeepFoldProtein/patchr/blob/main/pyproject.toml |
| server.py | https://github.com/DeepFoldProtein/patchr/blob/main/server.py |
| server.py | https://github.com/DeepFoldProtein/patchr/blob/main/server.py |
| README | https://github.com/DeepFoldProtein/patchr |
| MIT license | https://github.com/DeepFoldProtein/patchr |
| https://github.com/DeepFoldProtein/patchr/blob/main/docs/logo.png |
| https://github.com/DeepFoldProtein/patchr#patchr |
| https://github.com/DeepFoldProtein/patchr/blob/main/LICENSE |
| https://www.python.org/ |
| https://colab.research.google.com/github/DeepFoldProtein/patchr/blob/main/colab_server.ipynb |
| Website | https://patchr.deepfold.org/ |
| Atlas | https://patchr.deepfold.org/atlas |
| Paper | https://github.com/DeepFoldProtein/patchr#cite |
| PATCHR-Studio | https://github.com/DeepFoldProtein/patchr#patchr-studio |
| Windows | https://github.com/DeepFoldProtein/patchr/releases/latest/download/patchr-studio-setup.exe |
| macOS (Apple Silicon) | https://github.com/DeepFoldProtein/patchr/releases/latest/download/patchr-studio.dmg |
| Linux | https://github.com/DeepFoldProtein/patchr/releases/latest/download/patchr-studio.AppImage |
| https://github.com/DeepFoldProtein/patchr/blob/main/docs/e2e_demo.gif |
| https://github.com/DeepFoldProtein/patchr/blob/main/docs/inpainting_1kx3_drift.gif |
| https://github.com/DeepFoldProtein/patchr/blob/main/docs/inpainting_6gis_drift.gif |
| https://github.com/DeepFoldProtein/patchr/blob/main/docs/inpainting_8gzr_drift.gif |
| Boltz-2 | https://github.com/jwohlwend/boltz |
| Protenix | https://github.com/bytedance/protenix |
| below | https://github.com/DeepFoldProtein/patchr#performance |
| PATCHR-Atlas | https://patchr.deepfold.org/atlas |
| https://github.com/DeepFoldProtein/patchr#patchr-atlas-large-scale-inpainting-of-the-pdb |
| https://patchr.deepfold.org/atlas |
| Explore the Atlas → | https://patchr.deepfold.org/atlas |
| https://github.com/DeepFoldProtein/patchr#explore-the-atlas- |
| https://github.com/DeepFoldProtein/patchr#installation |
| https://github.com/DeepFoldProtein/patchr#quick-start |
| https://github.com/DeepFoldProtein/patchr#simulation-ready-output |
| https://github.com/DeepFoldProtein/patchr#how-it-works |
| https://github.com/DeepFoldProtein/patchr#patchr-studio |
| releases page | https://github.com/DeepFoldProtein/patchr/releases |
| docs/STUDIO.md | https://github.com/DeepFoldProtein/patchr/blob/main/docs/STUDIO.md |
| Google Colab | https://colab.research.google.com/github/DeepFoldProtein/patchr/blob/main/colab_server.ipynb |
| https://github.com/DeepFoldProtein/patchr#server |
| https://github.com/DeepFoldProtein/patchr#performance |
| https://github.com/DeepFoldProtein/patchr#future-work |
| https://github.com/DeepFoldProtein/patchr#acknowledgments |
| Boltz-2 | https://github.com/jwohlwend/boltz |
| Protenix | https://github.com/bytedance/protenix |
| https://github.com/DeepFoldProtein/patchr#license |
| https://github.com/DeepFoldProtein/patchr#cite |
| patchr.deepfold.org | https://patchr.deepfold.org |
| Readme | https://github.com/DeepFoldProtein/patchr#readme-ov-file |
| MIT license | https://github.com/DeepFoldProtein/patchr#MIT-1-ov-file |
| Activity | https://github.com/DeepFoldProtein/patchr/activity |
| Custom properties | https://github.com/DeepFoldProtein/patchr/custom-properties |
| 10 forks | https://github.com/DeepFoldProtein/patchr/forks |
| Report repository | https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDeepFoldProtein%2Fpatchr&report=DeepFoldProtein+%28user%29 |
|
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