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Title: Issues · DKFZ-ODCF/AlignmentAndQCWorkflows · GitHub

Open Graph Title: Issues · DKFZ-ODCF/AlignmentAndQCWorkflows

X Title: Issues · DKFZ-ODCF/AlignmentAndQCWorkflows

Description: The DKFZ alignment workflow plugin originally developed at the eilslabs - Issues · DKFZ-ODCF/AlignmentAndQCWorkflows

Open Graph Description: The DKFZ alignment workflow plugin originally developed at the eilslabs - Issues · DKFZ-ODCF/AlignmentAndQCWorkflows

X Description: The DKFZ alignment workflow plugin originally developed at the eilslabs - Issues · DKFZ-ODCF/AlignmentAndQCWorkflows

Opengraph URL: https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows

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small number of reads / no aberrant reads triggers exception in chrom_diff.rhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/92
bugSomething isn't workinghttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20label%3Abug
GWarsowhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3AGWarsow
Roddy cannot zip folderhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/91
AndreasKienzlehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3AAndreasKienzle
.DepthOfCoverage_Target.txt has odd outputhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/90
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Get fingerprinting to work with ALT-contig referencehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/86
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Remove the biobambam sort optionhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/85
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Add bwa-postalt.js to WGBS bwa jobhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/84
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Move fingerprinting into pipelinehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/67
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
bwa-mem2 supporthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/66
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Check wait -n for task management in bash codehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/65
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Filename length restriction in R diffchrom scripthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/63
bugSomething isn't workinghttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20label%3Abug
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Lift methylation meta job to WFMS levelhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/62
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
Calculate target region size from TARGET_REGION_FILEhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues/58
vinjanahttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues?q=is%3Aissue%20state%3Aopen%20author%3Avinjana
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