René's URL Explorer Experiment


Title: GitHub - DKFZ-ODCF/AlignmentAndQCWorkflows: The DKFZ alignment workflow plugin originally developed at the eilslabs · GitHub

Open Graph Title: GitHub - DKFZ-ODCF/AlignmentAndQCWorkflows: The DKFZ alignment workflow plugin originally developed at the eilslabs

X Title: GitHub - DKFZ-ODCF/AlignmentAndQCWorkflows: The DKFZ alignment workflow plugin originally developed at the eilslabs

Description: The DKFZ alignment workflow plugin originally developed at the eilslabs - DKFZ-ODCF/AlignmentAndQCWorkflows

Open Graph Description: The DKFZ alignment workflow plugin originally developed at the eilslabs - DKFZ-ODCF/AlignmentAndQCWorkflows

X Description: The DKFZ alignment workflow plugin originally developed at the eilslabs - DKFZ-ODCF/AlignmentAndQCWorkflows

Opengraph URL: https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:eea1a857-8e0c-4bc0-8891-f0fd447e1d8a
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id84AA:19FD3A:52FC9:6E68B:6A4C6312
html-safe-noncea951c3a788c38202ca332c580ae2b9eeb8599806e076e6d02b169d34f5938571
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4NEFBOjE5RkQzQTo1MkZDOTo2RTY4Qjo2QTRDNjMxMiIsInZpc2l0b3JfaWQiOiI0MzA2OTc2MTAzNjUyNDE4MzIyIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmace6b0c466e981fe0a1096267e5f6d1001b4535a36a3e2238a82e446dd8c94f195
hovercard-subject-tagrepository:138299718
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
twitter:imagehttps://opengraph.githubassets.com/f024fa55fcfe66faa77dcc7f5a98661a70d4509c1081dae3f432766bb332be6f/DKFZ-ODCF/AlignmentAndQCWorkflows
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/f024fa55fcfe66faa77dcc7f5a98661a70d4509c1081dae3f432766bb332be6f/DKFZ-ODCF/AlignmentAndQCWorkflows
og:image:altThe DKFZ alignment workflow plugin originally developed at the eilslabs - DKFZ-ODCF/AlignmentAndQCWorkflows
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-controlno-cache
go-importgithub.com/DKFZ-ODCF/AlignmentAndQCWorkflows git https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows.git
octolytics-dimension-user_id40234670
octolytics-dimension-user_loginDKFZ-ODCF
octolytics-dimension-repository_id138299718
octolytics-dimension-repository_nwoDKFZ-ODCF/AlignmentAndQCWorkflows
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id138299718
octolytics-dimension-repository_network_root_nwoDKFZ-ODCF/AlignmentAndQCWorkflows
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release14099438da5379150f15a2892474c7c7e6c0e55e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDKFZ-ODCF%2FAlignmentAndQCWorkflows
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FDKFZ-ODCF%2FAlignmentAndQCWorkflows
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DKFZ-ODCF%2FAlignmentAndQCWorkflows
Reloadhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Reloadhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Reloadhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Please reload this pagehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
DKFZ-ODCF https://github.com/DKFZ-ODCF
AlignmentAndQCWorkflowshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Notifications https://github.com/login?return_to=%2FDKFZ-ODCF%2FAlignmentAndQCWorkflows
Fork 5 https://github.com/login?return_to=%2FDKFZ-ODCF%2FAlignmentAndQCWorkflows
Star 7 https://github.com/login?return_to=%2FDKFZ-ODCF%2FAlignmentAndQCWorkflows
Code https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Issues 47 https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues
Pull requests 2 https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/pulls
Discussions https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/discussions
Actions https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/actions
Projects https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/projects
Wiki https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
Security and quality 0 https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/security
Insights https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/pulse
Code https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Issues https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/issues
Pull requests https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/pulls
Discussions https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/discussions
Actions https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/actions
Projects https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/projects
Wiki https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
Security and quality https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/security
Insights https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/pulse
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Brancheshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/branches
Tagshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tags
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/branches
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tags
332 Commitshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/commits/master/
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/commits/master/
docs/imageshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tree/master/docs/images
docs/imageshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tree/master/docs/images
resourceshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tree/master/resources
resourceshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tree/master/resources
src/de/dkfz/b080/cohttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tree/master/src/de/dkfz/b080/co
src/de/dkfz/b080/cohttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tree/master/src/de/dkfz/b080/co
.gitignorehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/.gitignore
.gitignorehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/.gitignore
AlignmentAndQCWorkflows.imlhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/AlignmentAndQCWorkflows.iml
AlignmentAndQCWorkflows.imlhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/AlignmentAndQCWorkflows.iml
AlignmentAndQCWorkflows.jarhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/AlignmentAndQCWorkflows.jar
AlignmentAndQCWorkflows.jarhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/AlignmentAndQCWorkflows.jar
CONTRIBUTORShttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/CONTRIBUTORS
CONTRIBUTORShttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/CONTRIBUTORS
Changelog.mdhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/Changelog.md
Changelog.mdhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/Changelog.md
ConfigSummary.pyhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/ConfigSummary.py
ConfigSummary.pyhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/ConfigSummary.py
LICENSEhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/LICENSE
LICENSEhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/LICENSE
README.mdhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/README.md
README.mdhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/README.md
buildinfo.txthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/buildinfo.txt
buildinfo.txthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/buildinfo.txt
buildversion.txthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/buildversion.txt
buildversion.txthttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/buildversion.txt
revertAndUnstageCompiledFiles.shhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/revertAndUnstageCompiledFiles.sh
revertAndUnstageCompiledFiles.shhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/revertAndUnstageCompiledFiles.sh
READMEhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Licensehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#alignment-and-quality-control-plugin-for-roddy
Roddyhttps://github.com/eilslabs/Roddy
methylCtoolshttps://github.com/hovestadt/methylCtools
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#documentation
wikihttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#german-network-on-bioinformatic-infrastructure-denbi
https://www.denbi.de/
German Network for Bioinformatic Infrastructure (de.NBI)https://www.denbi.de/
this very short (30-60 seconds) surveyhttps://www.surveymonkey.de/r/denbi-service?sc=hd-hub&tool=AlignmentAndQCWorkflows
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#change-logs
changelogs filehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/blob/master/Changelog.md
github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wikihttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
workflow https://github.com/topics/workflow
bam-files https://github.com/topics/bam-files
quality-control https://github.com/topics/quality-control
alignment https://github.com/topics/alignment
wes https://github.com/topics/wes
wgbs https://github.com/topics/wgbs
bwa https://github.com/topics/bwa
bwa-mem https://github.com/topics/bwa-mem
conda-environment https://github.com/topics/conda-environment
fastq-files https://github.com/topics/fastq-files
roddy https://github.com/topics/roddy
Readme https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#readme-ov-file
View license https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows#License-1-ov-file
Please reload this pagehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Activityhttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/activity
Custom propertieshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/custom-properties
5 forkshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDKFZ-ODCF%2FAlignmentAndQCWorkflows&report=DKFZ-ODCF+%28user%29
Releaseshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/releases
24 tags https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/tags
Packages 0https://github.com/orgs/DKFZ-ODCF/packages?repo_name=AlignmentAndQCWorkflows
Please reload this pagehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Contributorshttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/graphs/contributors
Please reload this pagehttps://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows
Python 25.0% https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/search?l=python
Shell 21.6% https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/search?l=shell
Perl 19.6% https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/search?l=perl
Groovy 13.0% https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/search?l=groovy
R 8.9% https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/search?l=r
Java 8.3% https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/search?l=java
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.