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Title: Issues · CompEvol/beast2 · GitHub

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Description: Bayesian Evolutionary Analysis by Sampling Trees. Contribute to CompEvol/beast2 development by creating an account on GitHub.

Open Graph Description: Bayesian Evolutionary Analysis by Sampling Trees. Contribute to CompEvol/beast2 development by creating an account on GitHub.

X Description: Bayesian Evolutionary Analysis by Sampling Trees. Contribute to CompEvol/beast2 development by creating an account on GitHub.

Opengraph URL: https://github.com/CompEvol/beast2

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Bundled Java runtime in BEAST 2.7.x releases has known vulnerabilitieshttps://github.com/CompEvol/beast2/issues/1215
berkleycamhttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Aberkleycam
EpochFlexOperator causes infinite loop/livelock when applied to 2-treeshttps://github.com/CompEvol/beast2/issues/1214
dpascallhttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Adpascall
AppLauncher should remain in headless mode when running from CLI with argumentshttps://github.com/CompEvol/beast2/issues/1212
rbouckaerthttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Arbouckaert
State.robustlyCalcPosterior calls store() as a side effecthttps://github.com/CompEvol/beast2/issues/1211
alexeidhttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Aalexeid
java.lang.NullPointerException: Cannot invoke "Object.getClass()" because "" is nullhttps://github.com/CompEvol/beast2/issues/1208
genesandboneshttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Agenesandbones
Running BEAST from command line fails when arguments contain spaceshttps://github.com/CompEvol/beast2/issues/1205
jugnehttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Ajugne
Add tree annotator settings to output as commentshttps://github.com/CompEvol/beast2/issues/1204
SimonGreenhillhttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3ASimonGreenhill
Exception in thread "main" java.lang.NullPointerException: Cannot invoke "java.net.URL.openConnection()" because "" is nullhttps://github.com/CompEvol/beast2/issues/1197
Gipsy-The-Shellerhttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3AGipsy-The-Sheller
Use Function in all inputs of SiteModelhttps://github.com/CompEvol/beast2/issues/1196
enhancementhttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20label%3Aenhancement
walterxiehttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Awalterxie
BEAUti Tip Date panel does not show Nexus configurationhttps://github.com/CompEvol/beast2/issues/1194
BEAUtihttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20label%3ABEAUti
defecthttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20label%3Adefect
walterxiehttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Awalterxie
Restrict the location of clade MRCAshttps://github.com/CompEvol/beast2/issues/1193
sbenvarihttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3Asbenvari
generalise Dirichlet Distribution to deal with vectors that do not sum to 1https://github.com/CompEvol/beast2/issues/1190
EvaLiythttps://github.com/CompEvol/beast2/issues?q=is%3Aissue%20state%3Aopen%20author%3AEvaLiyt
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