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Title: GitHub - CogStack/MedCATtutorials: General tutorials for the setup and use of MedCAT.

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Description: General tutorials for the setup and use of MedCAT. - CogStack/MedCATtutorials

Open Graph Description: General tutorials for the setup and use of MedCAT. - CogStack/MedCATtutorials

X Description: General tutorials for the setup and use of MedCAT. - CogStack/MedCATtutorials

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https://github.com/CogStack/MedCATtutorials#introductory-tutorials
TDShttps://medium.com/@w_is_h/medcat-introduction-analyzing-electronic-health-records-e1c420afa13a
[OPTIONAL] Logging With MedCAThttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.ipynb
Data set Preparation and Basic Statisticshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_2_Dataset_Analysis_and_Preparation.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_2_Dataset_Analysis_and_Preparation.ipynb
TDShttps://medium.com/towards-data-science/medcat-dataset-analysis-and-preparation-be8bc910bd6d
Building a new Concept Database (CDB) and Vocabulary (Vocab)https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb
TDShttps://medium.com/towards-data-science/medcat-extracting-diseases-from-electronic-health-records-f53c45b3d1c1
Unsupervised training and NER+Lhttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb
TDShttps://medium.com/towards-data-science/medcat-extracting-diseases-from-electronic-health-records-f53c45b3d1c1
Technical model optimisationshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_3_Model_technical_optimisations.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb
Creating a tokenizer model (huggingface) and embeddings for MetaAnnotationshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.ipynb
Supervised training and fine-tuning + Meta-annotationshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.ipynb
Annotating documents with the full MedCAT pipeline with MetaAnnotationshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.ipynb
Analysing the resultshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.ipynb
TDShttps://medium.com/@w_is_h/prevalence-of-physical-and-mental-diseases-450c0f4f5851
Supervised training Relation-annotationshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/rel_cat_tutorials/notebooks/introductory/Part_6_1_Supervised_Training_Relation_Extraction.html
Infering relationships from annotationshttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/rel_cat_tutorials/notebooks/introductory/Part_6_2_Infering_relations_from_annotations_with_Relation_toolkit.html
https://github.com/CogStack/MedCATtutorials#specialised-tutorials
Working with SNOMED CT and building a custom Concept Database (CDB)https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/specialised/Preprocessing_SNOMED_CT.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/specialised/Preprocessing_SNOMED_CT.ipynb
Comparing models using regression test toolinghttps://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/specialised/Comparing_Models_with_RegressionSuite.html
https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/specialised/Comparing_Models_with_RegressionSuite.ipynb
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