René's URL Explorer Experiment


Title: GitHub - CSB5/XNA_Basecaller: NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning" · GitHub

Open Graph Title: GitHub - CSB5/XNA_Basecaller: NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning"

X Title: GitHub - CSB5/XNA_Basecaller: NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning"

Description: NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning" - CSB5/XNA_Basecaller

Open Graph Description: NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning" - CSB5/XNA_Basecaller

X Description: NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning" - CSB5/XNA_Basecaller

Opengraph URL: https://github.com/CSB5/XNA_Basecaller

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:8b977069-479c-ce03-f55d-e5e932f2cb46
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC122:1AC447:DF6E03:13E175E:6A4BC7C3
html-safe-nonce3994ab475982a1692b6b02252b2e7e7793a413dde7f818245dc34c45285d70b1
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDMTIyOjFBQzQ0NzpERjZFMDM6MTNFMTc1RTo2QTRCQzdDMyIsInZpc2l0b3JfaWQiOiI2Mjg1MzU4ODQwNDQwMTQ1ODU5IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacb2dad01f76f8014b56788e412532e5c77fc0d1db08f64536db5099a98229e209
hovercard-subject-tagrepository:893805606
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/CSB5/XNA_Basecaller
twitter:imagehttps://opengraph.githubassets.com/ab82ce17eb03c142360359650da76fe962f44004f2d566221d608aec267fc5ec/CSB5/XNA_Basecaller
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/ab82ce17eb03c142360359650da76fe962f44004f2d566221d608aec267fc5ec/CSB5/XNA_Basecaller
og:image:altNCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning" - CSB5/XNA_Basecaller
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None14aa00ce5bdb34d0eefb5facbffd7de9e144c688d8a93ef8df902d5f94b51dd7
turbo-cache-controlno-cache
go-importgithub.com/CSB5/XNA_Basecaller git https://github.com/CSB5/XNA_Basecaller.git
octolytics-dimension-user_id3702229
octolytics-dimension-user_loginCSB5
octolytics-dimension-repository_id893805606
octolytics-dimension-repository_nwoCSB5/XNA_Basecaller
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id893805606
octolytics-dimension-repository_network_root_nwoCSB5/XNA_Basecaller
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release58b8f89190447502561829f30862aa0a99d53367
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/CSB5/XNA_Basecaller#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FCSB5%2FXNA_Basecaller
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FCSB5%2FXNA_Basecaller
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=CSB5%2FXNA_Basecaller
Reloadhttps://github.com/CSB5/XNA_Basecaller
Reloadhttps://github.com/CSB5/XNA_Basecaller
Reloadhttps://github.com/CSB5/XNA_Basecaller
Please reload this pagehttps://github.com/CSB5/XNA_Basecaller
CSB5 https://github.com/CSB5
XNA_Basecallerhttps://github.com/CSB5/XNA_Basecaller
Notifications https://github.com/login?return_to=%2FCSB5%2FXNA_Basecaller
Fork 0 https://github.com/login?return_to=%2FCSB5%2FXNA_Basecaller
Star 3 https://github.com/login?return_to=%2FCSB5%2FXNA_Basecaller
Code https://github.com/CSB5/XNA_Basecaller
Issues 0 https://github.com/CSB5/XNA_Basecaller/issues
Pull requests 0 https://github.com/CSB5/XNA_Basecaller/pulls
Actions https://github.com/CSB5/XNA_Basecaller/actions
Projects https://github.com/CSB5/XNA_Basecaller/projects
Security and quality 0 https://github.com/CSB5/XNA_Basecaller/security
Insights https://github.com/CSB5/XNA_Basecaller/pulse
Code https://github.com/CSB5/XNA_Basecaller
Issues https://github.com/CSB5/XNA_Basecaller/issues
Pull requests https://github.com/CSB5/XNA_Basecaller/pulls
Actions https://github.com/CSB5/XNA_Basecaller/actions
Projects https://github.com/CSB5/XNA_Basecaller/projects
Security and quality https://github.com/CSB5/XNA_Basecaller/security
Insights https://github.com/CSB5/XNA_Basecaller/pulse
https://github.com/CSB5/XNA_Basecaller
Brancheshttps://github.com/CSB5/XNA_Basecaller/branches
Tagshttps://github.com/CSB5/XNA_Basecaller/tags
https://github.com/CSB5/XNA_Basecaller/branches
https://github.com/CSB5/XNA_Basecaller/tags
18 Commitshttps://github.com/CSB5/XNA_Basecaller/commits/main/
https://github.com/CSB5/XNA_Basecaller/commits/main/
srchttps://github.com/CSB5/XNA_Basecaller/tree/main/src
srchttps://github.com/CSB5/XNA_Basecaller/tree/main/src
ub-bonitohttps://github.com/CSB5/XNA_Basecaller/tree/main/ub-bonito
ub-bonitohttps://github.com/CSB5/XNA_Basecaller/tree/main/ub-bonito
xna_libshttps://github.com/CSB5/XNA_Basecaller/tree/main/xna_libs
xna_libshttps://github.com/CSB5/XNA_Basecaller/tree/main/xna_libs
.gitignorehttps://github.com/CSB5/XNA_Basecaller/blob/main/.gitignore
.gitignorehttps://github.com/CSB5/XNA_Basecaller/blob/main/.gitignore
LICENSEhttps://github.com/CSB5/XNA_Basecaller/blob/main/LICENSE
LICENSEhttps://github.com/CSB5/XNA_Basecaller/blob/main/LICENSE
README.mdhttps://github.com/CSB5/XNA_Basecaller/blob/main/README.md
README.mdhttps://github.com/CSB5/XNA_Basecaller/blob/main/README.md
download_data.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/download_data.sh
download_data.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/download_data.sh
env.ymlhttps://github.com/CSB5/XNA_Basecaller/blob/main/env.yml
env.ymlhttps://github.com/CSB5/XNA_Basecaller/blob/main/env.yml
eval_model.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/eval_model.sh
eval_model.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/eval_model.sh
full_setup.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/full_setup.sh
full_setup.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/full_setup.sh
overview.pnghttps://github.com/CSB5/XNA_Basecaller/blob/main/overview.png
overview.pnghttps://github.com/CSB5/XNA_Basecaller/blob/main/overview.png
run_ub_validation.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/run_ub_validation.sh
run_ub_validation.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/run_ub_validation.sh
train_and_eval.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/train_and_eval.sh
train_and_eval.shhttps://github.com/CSB5/XNA_Basecaller/blob/main/train_and_eval.sh
READMEhttps://github.com/CSB5/XNA_Basecaller
MIT licensehttps://github.com/CSB5/XNA_Basecaller
https://github.com/CSB5/XNA_Basecaller/blob/main/overview.png
https://github.com/CSB5/XNA_Basecaller#xna-basecaller
https://doi.org/10.1038/s41467-025-62347-z
https://doi.org/10.5281/zenodo.15751758
https://www.nature.com/articles/s41467-025-62347-zhttps://www.nature.com/articles/s41467-025-62347-z
https://github.com/CSB5/XNA_Basecaller#setup
https://github.com/CSB5/XNA_Basecaller#full-setup-script
https://github.com/CSB5/XNA_Basecaller#installation-stepwise
https://github.com/CSB5/XNA_Basecaller#download-data
PRJEB82716https://www.ebi.ac.uk/ena/browser/view/PRJEB82716
https://github.com/CSB5/XNA_Basecaller#usage
https://github.com/CSB5/XNA_Basecaller#training
https://github.com/CSB5/XNA_Basecaller#evaluation
https://github.com/CSB5/XNA_Basecaller#additional-tools
https://github.com/CSB5/XNA_Basecaller#results
https://github.com/CSB5/XNA_Basecaller#data-availability-ena
PRJEB82716https://www.ebi.ac.uk/ena/browser/view/PRJEB82716
https://github.com/CSB5/XNA_Basecaller#potential-future-updates
https://github.com/CSB5/XNA_Basecaller#citation
https://doi.org/10.1038/s41467-025-62347-zhttps://doi.org/10.1038/s41467-025-62347-z
Readme https://github.com/CSB5/XNA_Basecaller#readme-ov-file
MIT license https://github.com/CSB5/XNA_Basecaller#MIT-1-ov-file
Please reload this pagehttps://github.com/CSB5/XNA_Basecaller
Activityhttps://github.com/CSB5/XNA_Basecaller/activity
Custom propertieshttps://github.com/CSB5/XNA_Basecaller/custom-properties
0 forkshttps://github.com/CSB5/XNA_Basecaller/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FCSB5%2FXNA_Basecaller&report=CSB5+%28user%29
Releases 1https://github.com/CSB5/XNA_Basecaller/releases
v1 - Manuscript Latest Jun 27, 2025 https://github.com/CSB5/XNA_Basecaller/releases/tag/v1.0.0
Please reload this pagehttps://github.com/CSB5/XNA_Basecaller
Contributorshttps://github.com/CSB5/XNA_Basecaller/graphs/contributors
Please reload this pagehttps://github.com/CSB5/XNA_Basecaller
Python 95.7% https://github.com/CSB5/XNA_Basecaller/search?l=python
Shell 3.8% https://github.com/CSB5/XNA_Basecaller/search?l=shell
Makefile 0.5% https://github.com/CSB5/XNA_Basecaller/search?l=makefile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.