René's URL Explorer Experiment


Title: GitHub - CCBR/LOGAN: whoLe genOme-sequencinG Analysis pipeliNe

Open Graph Title: GitHub - CCBR/LOGAN: whoLe genOme-sequencinG Analysis pipeliNe

X Title: GitHub - CCBR/LOGAN: whoLe genOme-sequencinG Analysis pipeliNe

Description: whoLe genOme-sequencinG Analysis pipeliNe. Contribute to CCBR/LOGAN development by creating an account on GitHub.

Open Graph Description: whoLe genOme-sequencinG Analysis pipeliNe. Contribute to CCBR/LOGAN development by creating an account on GitHub.

X Description: whoLe genOme-sequencinG Analysis pipeliNe. Contribute to CCBR/LOGAN development by creating an account on GitHub.

Opengraph URL: https://github.com/CCBR/LOGAN

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:1498b194-fb06-e04a-58fc-7da08df0df0f
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9DD4:1CFB2B:2DCF086:3D3E0EF:6992EE90
html-safe-nonce6acc61ca8fd6ff16408d786fef7e5c55dcaa4a03ddbf266e0aa7a984212d3c9b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5REQ0OjFDRkIyQjoyRENGMDg2OjNEM0UwRUY6Njk5MkVFOTAiLCJ2aXNpdG9yX2lkIjoiMjIwMDg2NjgzMzM4MDMzOTM0NCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac33b0291787e7b41ba9d7e4ad31780a8a17c8d1dfc41cc15492cf613f427714cc
hovercard-subject-tagrepository:518173287
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/CCBR/LOGAN
twitter:imagehttps://opengraph.githubassets.com/42fa40dea78074eb04eda3c8140a96f42ecaa540341dca93bbcc7fc8c8389bfc/CCBR/LOGAN
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/42fa40dea78074eb04eda3c8140a96f42ecaa540341dca93bbcc7fc8c8389bfc/CCBR/LOGAN
og:image:altwhoLe genOme-sequencinG Analysis pipeliNe. Contribute to CCBR/LOGAN development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None01ab16879a3159e6f0717ab948b9b562e162a6aafd1f4393b786b07b747df244
turbo-cache-controlno-preview
go-importgithub.com/CCBR/LOGAN git https://github.com/CCBR/LOGAN.git
octolytics-dimension-user_id10426639
octolytics-dimension-user_loginCCBR
octolytics-dimension-repository_id518173287
octolytics-dimension-repository_nwoCCBR/LOGAN
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id518173287
octolytics-dimension-repository_network_root_nwoCCBR/LOGAN
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseb1570f3928bef80fa5fc7890ce0942e9b696ad9d
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/CCBR/LOGAN#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FCCBR%2FLOGAN
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FCCBR%2FLOGAN
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=CCBR%2FLOGAN
Reloadhttps://github.com/CCBR/LOGAN
Reloadhttps://github.com/CCBR/LOGAN
Reloadhttps://github.com/CCBR/LOGAN
CCBR https://github.com/CCBR
LOGANhttps://github.com/CCBR/LOGAN
Notifications https://github.com/login?return_to=%2FCCBR%2FLOGAN
Fork 5 https://github.com/login?return_to=%2FCCBR%2FLOGAN
Star 3 https://github.com/login?return_to=%2FCCBR%2FLOGAN
ccbr.github.io/LOGAN/https://ccbr.github.io/LOGAN/
MIT license https://github.com/CCBR/LOGAN/blob/main/LICENSE
3 stars https://github.com/CCBR/LOGAN/stargazers
5 forks https://github.com/CCBR/LOGAN/forks
Branches https://github.com/CCBR/LOGAN/branches
Tags https://github.com/CCBR/LOGAN/tags
Activity https://github.com/CCBR/LOGAN/activity
Star https://github.com/login?return_to=%2FCCBR%2FLOGAN
Notifications https://github.com/login?return_to=%2FCCBR%2FLOGAN
Code https://github.com/CCBR/LOGAN
Issues 18 https://github.com/CCBR/LOGAN/issues
Pull requests 0 https://github.com/CCBR/LOGAN/pulls
Discussions https://github.com/CCBR/LOGAN/discussions
Actions https://github.com/CCBR/LOGAN/actions
Projects 0 https://github.com/CCBR/LOGAN/projects
Security 0 https://github.com/CCBR/LOGAN/security
Insights https://github.com/CCBR/LOGAN/pulse
Code https://github.com/CCBR/LOGAN
Issues https://github.com/CCBR/LOGAN/issues
Pull requests https://github.com/CCBR/LOGAN/pulls
Discussions https://github.com/CCBR/LOGAN/discussions
Actions https://github.com/CCBR/LOGAN/actions
Projects https://github.com/CCBR/LOGAN/projects
Security https://github.com/CCBR/LOGAN/security
Insights https://github.com/CCBR/LOGAN/pulse
Brancheshttps://github.com/CCBR/LOGAN/branches
Tagshttps://github.com/CCBR/LOGAN/tags
https://github.com/CCBR/LOGAN/branches
https://github.com/CCBR/LOGAN/tags
570 Commitshttps://github.com/CCBR/LOGAN/commits/main/
https://github.com/CCBR/LOGAN/commits/main/
.githubhttps://github.com/CCBR/LOGAN/tree/main/.github
.githubhttps://github.com/CCBR/LOGAN/tree/main/.github
.testshttps://github.com/CCBR/LOGAN/tree/main/.tests
.testshttps://github.com/CCBR/LOGAN/tree/main/.tests
assetshttps://github.com/CCBR/LOGAN/tree/main/assets
assetshttps://github.com/CCBR/LOGAN/tree/main/assets
binhttps://github.com/CCBR/LOGAN/tree/main/bin
binhttps://github.com/CCBR/LOGAN/tree/main/bin
confhttps://github.com/CCBR/LOGAN/tree/main/conf
confhttps://github.com/CCBR/LOGAN/tree/main/conf
dockerhttps://github.com/CCBR/LOGAN/tree/main/docker
dockerhttps://github.com/CCBR/LOGAN/tree/main/docker
docshttps://github.com/CCBR/LOGAN/tree/main/docs
docshttps://github.com/CCBR/LOGAN/tree/main/docs
libhttps://github.com/CCBR/LOGAN/tree/main/lib
libhttps://github.com/CCBR/LOGAN/tree/main/lib
modules/localhttps://github.com/CCBR/LOGAN/tree/main/modules/local
modules/localhttps://github.com/CCBR/LOGAN/tree/main/modules/local
srchttps://github.com/CCBR/LOGAN/tree/main/src
srchttps://github.com/CCBR/LOGAN/tree/main/src
subworkflows/localhttps://github.com/CCBR/LOGAN/tree/main/subworkflows/local
subworkflows/localhttps://github.com/CCBR/LOGAN/tree/main/subworkflows/local
.gitignorehttps://github.com/CCBR/LOGAN/blob/main/.gitignore
.gitignorehttps://github.com/CCBR/LOGAN/blob/main/.gitignore
.pre-commit-config.yamlhttps://github.com/CCBR/LOGAN/blob/main/.pre-commit-config.yaml
.pre-commit-config.yamlhttps://github.com/CCBR/LOGAN/blob/main/.pre-commit-config.yaml
.prettierignorehttps://github.com/CCBR/LOGAN/blob/main/.prettierignore
.prettierignorehttps://github.com/CCBR/LOGAN/blob/main/.prettierignore
.prettierrchttps://github.com/CCBR/LOGAN/blob/main/.prettierrc
.prettierrchttps://github.com/CCBR/LOGAN/blob/main/.prettierrc
CHANGELOG.mdhttps://github.com/CCBR/LOGAN/blob/main/CHANGELOG.md
CHANGELOG.mdhttps://github.com/CCBR/LOGAN/blob/main/CHANGELOG.md
CITATION.cffhttps://github.com/CCBR/LOGAN/blob/main/CITATION.cff
CITATION.cffhttps://github.com/CCBR/LOGAN/blob/main/CITATION.cff
LICENSEhttps://github.com/CCBR/LOGAN/blob/main/LICENSE
LICENSEhttps://github.com/CCBR/LOGAN/blob/main/LICENSE
README.mdhttps://github.com/CCBR/LOGAN/blob/main/README.md
README.mdhttps://github.com/CCBR/LOGAN/blob/main/README.md
VERSIONhttps://github.com/CCBR/LOGAN/blob/main/VERSION
VERSIONhttps://github.com/CCBR/LOGAN/blob/main/VERSION
main.nfhttps://github.com/CCBR/LOGAN/blob/main/main.nf
main.nfhttps://github.com/CCBR/LOGAN/blob/main/main.nf
main.pyhttps://github.com/CCBR/LOGAN/blob/main/main.py
main.pyhttps://github.com/CCBR/LOGAN/blob/main/main.py
mkdocs.ymlhttps://github.com/CCBR/LOGAN/blob/main/mkdocs.yml
mkdocs.ymlhttps://github.com/CCBR/LOGAN/blob/main/mkdocs.yml
nextflow.confighttps://github.com/CCBR/LOGAN/blob/main/nextflow.config
nextflow.confighttps://github.com/CCBR/LOGAN/blob/main/nextflow.config
pyproject.tomlhttps://github.com/CCBR/LOGAN/blob/main/pyproject.toml
pyproject.tomlhttps://github.com/CCBR/LOGAN/blob/main/pyproject.toml
setup.pyhttps://github.com/CCBR/LOGAN/blob/main/setup.py
setup.pyhttps://github.com/CCBR/LOGAN/blob/main/setup.py
READMEhttps://github.com/CCBR/LOGAN
Contributinghttps://github.com/CCBR/LOGAN
MIT licensehttps://github.com/CCBR/LOGAN
Securityhttps://github.com/CCBR/LOGAN
https://github.com/CCBR/LOGAN#logan-
https://github.com/CCBR/LOGAN/actions/workflows/build.yml
https://doi.org/10.5281/zenodo.14907169
https://hub.docker.com/r/nciccbr/ccbr_wes_base
https://github.com/ccbr/LOGAN/issues
https://github.com/ccbr/LOGAN/blob/master/LICENSE
https://github.com/ccbr/LOGAN/releases/latest
https://github.com/CCBR/LOGAN#overview
LOGAN's documentationhttps://ccbr.github.io/LOGAN
Singularity1https://singularity.lbl.gov/
Nextflow2https://nextflow.io/
usagehttps://ccbr.github.io/LOGAN/usage/run/
FAQhttps://github.com/CCBR/LOGAN/blob/main/faq/questions.md
opening an issue on Githubhttps://github.com/ccbr/LOGAN/issues
Exome-seekhttps://github.com/CCBR/XAVIER
OpenOmicshttps://github.com/openOmics/genome-seek
https://github.com/CCBR/LOGAN#dependencies
singularityhttps://singularity.lbl.gov/all-releases
DockerHubhttps://hub.docker.com/orgs/nciccbr/repositories
https://github.com/CCBR/LOGAN#set-up
Biowulf HPChttps://github.com/CCBR/LOGAN#biowulf
docshttps://ccbr.github.io/LOGAN/
https://github.com/CCBR/LOGAN#biowulf
Biowulfhttps://hpc.nih.gov/
https://github.com/CCBR/LOGAN#usage
https://github.com/CCBR/LOGAN#input-files
https://github.com/CCBR/LOGAN#genome
https://github.com/CCBR/LOGAN#hg38-has-options-for-either
https://github.com/CCBR/LOGAN#operating-modes
https://github.com/CCBR/LOGAN#1-paired-tumornormal-mode
https://github.com/CCBR/LOGAN#2-tumor-only-mode
https://github.com/CCBR/LOGAN#calling-mode
https://github.com/CCBR/LOGAN#optional-arguments
https://github.com/CCBR/LOGAN#running-logan
https://github.com/CCBR/LOGAN#pipeline-tools-and-overview
https://github.com/CCBR/LOGAN/blob/main/docs/LOGAN.png
https://github.com/CCBR/LOGAN#contribute
repositoryhttps://github.com/ccbr/LOGAN/pulls
https://github.com/CCBR/LOGAN#references
CCBR Nextflow Templatehttps://github.com/CCBR/CCBR_NextflowTemplate
ccbr.github.io/LOGAN/https://ccbr.github.io/LOGAN/
workflow https://github.com/topics/workflow
bioinformatics https://github.com/topics/bioinformatics
pipeline https://github.com/topics/pipeline
Readme https://github.com/CCBR/LOGAN#readme-ov-file
MIT license https://github.com/CCBR/LOGAN#MIT-1-ov-file
Contributing https://github.com/CCBR/LOGAN#contributing-ov-file
Security policy https://github.com/CCBR/LOGAN#security-ov-file
Please reload this pagehttps://github.com/CCBR/LOGAN
Activityhttps://github.com/CCBR/LOGAN/activity
Custom propertieshttps://github.com/CCBR/LOGAN/custom-properties
3 starshttps://github.com/CCBR/LOGAN/stargazers
2 watchinghttps://github.com/CCBR/LOGAN/watchers
5 forkshttps://github.com/CCBR/LOGAN/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FCCBR%2FLOGAN&report=CCBR+%28user%29
Releases 5https://github.com/CCBR/LOGAN/releases
LOGAN 0.3.3 Latest Feb 12, 2026 https://github.com/CCBR/LOGAN/releases/tag/v0.3.3
+ 4 releaseshttps://github.com/CCBR/LOGAN/releases
Please reload this pagehttps://github.com/CCBR/LOGAN
Contributors 4https://github.com/CCBR/LOGAN/graphs/contributors
Please reload this pagehttps://github.com/CCBR/LOGAN
Nextflow 76.7% https://github.com/CCBR/LOGAN/search?l=nextflow
Python 8.3% https://github.com/CCBR/LOGAN/search?l=python
Dockerfile 6.4% https://github.com/CCBR/LOGAN/search?l=dockerfile
R 4.7% https://github.com/CCBR/LOGAN/search?l=r
Shell 2.4% https://github.com/CCBR/LOGAN/search?l=shell
Perl 1.1% https://github.com/CCBR/LOGAN/search?l=perl
Groovy 0.4% https://github.com/CCBR/LOGAN/search?l=groovy
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.