René's URL Explorer Experiment


Title: GitHub - BodenmillerGroup/IMCDataAnalysis: R based workflow for multiplexed imaging data · GitHub

Open Graph Title: GitHub - BodenmillerGroup/IMCDataAnalysis: R based workflow for multiplexed imaging data

X Title: GitHub - BodenmillerGroup/IMCDataAnalysis: R based workflow for multiplexed imaging data

Description: R based workflow for multiplexed imaging data. Contribute to BodenmillerGroup/IMCDataAnalysis development by creating an account on GitHub.

Open Graph Description: R based workflow for multiplexed imaging data. Contribute to BodenmillerGroup/IMCDataAnalysis development by creating an account on GitHub.

X Description: R based workflow for multiplexed imaging data. Contribute to BodenmillerGroup/IMCDataAnalysis development by creating an account on GitHub.

Opengraph URL: https://github.com/BodenmillerGroup/IMCDataAnalysis

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:44c95783-388c-05b4-cd6f-399b690f2185
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id828A:1B9F:57F305C:79A877A:6A4BA076
html-safe-nonce9cd51ed11f14f6cf5ced91955ebf0d650cad49296807404bd2bacbaabd4182fc
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4MjhBOjFCOUY6NTdGMzA1Qzo3OUE4NzdBOjZBNEJBMDc2IiwidmlzaXRvcl9pZCI6IjY0NDk1Mzc3MDYyNDYyNTA2MTQiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac46089d6ecc76e12913f2519473bdaefe3874d6a7f426700c5fa82065b2d3040a
hovercard-subject-tagrepository:306572506
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/BodenmillerGroup/IMCDataAnalysis
twitter:imagehttps://opengraph.githubassets.com/f20a7c350ef6277cfbd26d2ab3565625c8bac37b1e4b41ae3ad2bc701cef652e/BodenmillerGroup/IMCDataAnalysis
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/f20a7c350ef6277cfbd26d2ab3565625c8bac37b1e4b41ae3ad2bc701cef652e/BodenmillerGroup/IMCDataAnalysis
og:image:altR based workflow for multiplexed imaging data. Contribute to BodenmillerGroup/IMCDataAnalysis development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonea7e470aeb8fedd833ae331b0a162f6c5a72c09b899dd94a7cd531e5e0e3a93d5
turbo-cache-controlno-cache
go-importgithub.com/BodenmillerGroup/IMCDataAnalysis git https://github.com/BodenmillerGroup/IMCDataAnalysis.git
octolytics-dimension-user_id10165187
octolytics-dimension-user_loginBodenmillerGroup
octolytics-dimension-repository_id306572506
octolytics-dimension-repository_nwoBodenmillerGroup/IMCDataAnalysis
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id306572506
octolytics-dimension-repository_network_root_nwoBodenmillerGroup/IMCDataAnalysis
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release59ad79fae8b165db9a62b2142d969fa7b21eedcf
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/BodenmillerGroup/IMCDataAnalysis#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FBodenmillerGroup%2FIMCDataAnalysis
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FBodenmillerGroup%2FIMCDataAnalysis
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=BodenmillerGroup%2FIMCDataAnalysis
Reloadhttps://github.com/BodenmillerGroup/IMCDataAnalysis
Reloadhttps://github.com/BodenmillerGroup/IMCDataAnalysis
Reloadhttps://github.com/BodenmillerGroup/IMCDataAnalysis
Please reload this pagehttps://github.com/BodenmillerGroup/IMCDataAnalysis
BodenmillerGroup https://github.com/BodenmillerGroup
IMCDataAnalysishttps://github.com/BodenmillerGroup/IMCDataAnalysis
Notifications https://github.com/login?return_to=%2FBodenmillerGroup%2FIMCDataAnalysis
Fork 14 https://github.com/login?return_to=%2FBodenmillerGroup%2FIMCDataAnalysis
Star 38 https://github.com/login?return_to=%2FBodenmillerGroup%2FIMCDataAnalysis
Code https://github.com/BodenmillerGroup/IMCDataAnalysis
Issues 6 https://github.com/BodenmillerGroup/IMCDataAnalysis/issues
Pull requests 2 https://github.com/BodenmillerGroup/IMCDataAnalysis/pulls
Actions https://github.com/BodenmillerGroup/IMCDataAnalysis/actions
Projects https://github.com/BodenmillerGroup/IMCDataAnalysis/projects
Security and quality 0 https://github.com/BodenmillerGroup/IMCDataAnalysis/security
Insights https://github.com/BodenmillerGroup/IMCDataAnalysis/pulse
Code https://github.com/BodenmillerGroup/IMCDataAnalysis
Issues https://github.com/BodenmillerGroup/IMCDataAnalysis/issues
Pull requests https://github.com/BodenmillerGroup/IMCDataAnalysis/pulls
Actions https://github.com/BodenmillerGroup/IMCDataAnalysis/actions
Projects https://github.com/BodenmillerGroup/IMCDataAnalysis/projects
Security and quality https://github.com/BodenmillerGroup/IMCDataAnalysis/security
Insights https://github.com/BodenmillerGroup/IMCDataAnalysis/pulse
https://github.com/BodenmillerGroup/IMCDataAnalysis
Brancheshttps://github.com/BodenmillerGroup/IMCDataAnalysis/branches
Tagshttps://github.com/BodenmillerGroup/IMCDataAnalysis/tags
https://github.com/BodenmillerGroup/IMCDataAnalysis/branches
https://github.com/BodenmillerGroup/IMCDataAnalysis/tags
438 Commitshttps://github.com/BodenmillerGroup/IMCDataAnalysis/commits/main/
https://github.com/BodenmillerGroup/IMCDataAnalysis/commits/main/
.github/workflowshttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/.github/workflows
.github/workflowshttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/.github/workflows
datahttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/data
datahttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/data
imghttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/img
imghttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/img
publicationhttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/publication
publicationhttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/publication
scriptshttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/scripts
scriptshttps://github.com/BodenmillerGroup/IMCDataAnalysis/tree/main/scripts
.Rbuildignorehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/.Rbuildignore
.Rbuildignorehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/.Rbuildignore
.gitignorehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/.gitignore
.gitignorehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/.gitignore
01-intro.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/01-intro.Rmd
01-intro.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/01-intro.Rmd
02-processing.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/02-processing.Rmd
02-processing.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/02-processing.Rmd
03-prerequisites.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/03-prerequisites.Rmd
03-prerequisites.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/03-prerequisites.Rmd
04-read_data.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/04-read_data.Rmd
04-read_data.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/04-read_data.Rmd
05-spillover_matrix.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/05-spillover_matrix.Rmd
05-spillover_matrix.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/05-spillover_matrix.Rmd
06-quality_control.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/06-quality_control.Rmd
06-quality_control.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/06-quality_control.Rmd
07-batch_correction.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/07-batch_correction.Rmd
07-batch_correction.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/07-batch_correction.Rmd
08-phenotyping.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/08-phenotyping.Rmd
08-phenotyping.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/08-phenotyping.Rmd
09-singlecell_visualization.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/09-singlecell_visualization.Rmd
09-singlecell_visualization.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/09-singlecell_visualization.Rmd
10-image_visualization.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/10-image_visualization.Rmd
10-image_visualization.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/10-image_visualization.Rmd
11-spatial_analysis.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/11-spatial_analysis.Rmd
11-spatial_analysis.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/11-spatial_analysis.Rmd
12-references.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/12-references.Rmd
12-references.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/12-references.Rmd
CHANGELOG.mdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/CHANGELOG.md
CHANGELOG.mdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/CHANGELOG.md
DEVELOPMENT.mdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/DEVELOPMENT.md
DEVELOPMENT.mdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/DEVELOPMENT.md
Dockerfilehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/Dockerfile
Dockerfilehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/Dockerfile
IMCDataAnalysis.Rprojhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/IMCDataAnalysis.Rproj
IMCDataAnalysis.Rprojhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/IMCDataAnalysis.Rproj
LICENSEhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/LICENSE
LICENSEhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/LICENSE
README.mdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/README.md
README.mdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/README.md
_bookdown.ymlhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/_bookdown.yml
_bookdown.ymlhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/_bookdown.yml
_output.ymlhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/_output.yml
_output.ymlhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/_output.yml
book.bibhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/book.bib
book.bibhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/book.bib
index.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/index.Rmd
index.Rmdhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/index.Rmd
packages.bibhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/packages.bib
packages.bibhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/packages.bib
preamble.texhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/preamble.tex
preamble.texhttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/preamble.tex
style.csshttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/style.css
style.csshttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/style.css
READMEhttps://github.com/BodenmillerGroup/IMCDataAnalysis
MIT licensehttps://github.com/BodenmillerGroup/IMCDataAnalysis
https://doi.org/10.5281/zenodo.6806448
https://github.com/BodenmillerGroup/IMCDataAnalysis#r-based-analysis-workflow-for-multiplexed-imaging-data
https://github.com/BodenmillerGroup/IMCDataAnalysis/actions/workflows/build.yml
https://github.com/BodenmillerGroup/IMCDataAnalysis#scope
https://github.com/BodenmillerGroup/IMCDataAnalysis#update-freeze
herehttps://github.com/BodenmillerGroup/IMCDataAnalysis/issues
https://github.com/BodenmillerGroup/IMCDataAnalysis#usage
https://bodenmillergroup.github.io/IMCDataAnalysis/https://bodenmillergroup.github.io/IMCDataAnalysis/
herehttps://github.com/BodenmillerGroup/IMCDataAnalysis/pkgs/container/imcdataanalysis
Dockerhttps://docs.docker.com/get-docker/
https://github.com/BodenmillerGroup/IMCDataAnalysis#feedback
herehttps://github.com/BodenmillerGroup/IMCDataAnalysis/issues
https://github.com/BodenmillerGroup/IMCDataAnalysishttps://github.com/BodenmillerGroup/IMCDataAnalysis
https://github.com/BodenmillerGroup/IMCDataAnalysis#contributing-guidelines
herehttps://github.com/BodenmillerGroup/IMCDataAnalysis/issues
Dockerfilehttps://github.com/BodenmillerGroup/IMCDataAnalysis/blob/main/Dockerfile
https://github.com/BodenmillerGroup/IMCDataAnalysis#maintainer
Daniel Schulzhttps://github.com/SchulzDan
https://github.com/BodenmillerGroup/IMCDataAnalysis#contributors
Nils Elinghttps://github.com/nilseling
Vito Zanotellihttps://github.com/votti
Daniel Schulzhttps://github.com/SchulzDan
Jonas Windhagerhttps://github.com/jwindhager
Michelle Danielhttps://github.com/michdaniel
Lasse Meyerhttps://github.com/lassedochreden
https://github.com/BodenmillerGroup/IMCDataAnalysis#citation
https://doi.org/10.1038/s41596-023-00881-0https://doi.org/10.1038/s41596-023-00881-0
https://github.com/BodenmillerGroup/IMCDataAnalysis#funding
bodenmillergroup.github.io/IMCDataAnalysis/https://bodenmillergroup.github.io/IMCDataAnalysis/
bioconductor https://github.com/topics/bioconductor
spatial-analysis https://github.com/topics/spatial-analysis
image-analysis https://github.com/topics/image-analysis
single-cell https://github.com/topics/single-cell
Readme https://github.com/BodenmillerGroup/IMCDataAnalysis#readme-ov-file
MIT license https://github.com/BodenmillerGroup/IMCDataAnalysis#MIT-1-ov-file
Please reload this pagehttps://github.com/BodenmillerGroup/IMCDataAnalysis
Activityhttps://github.com/BodenmillerGroup/IMCDataAnalysis/activity
Custom propertieshttps://github.com/BodenmillerGroup/IMCDataAnalysis/custom-properties
14 forkshttps://github.com/BodenmillerGroup/IMCDataAnalysis/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FBodenmillerGroup%2FIMCDataAnalysis&report=BodenmillerGroup+%28user%29
Releases 5https://github.com/BodenmillerGroup/IMCDataAnalysis/releases
Added seed before `predict` Latest Nov 27, 2023 https://github.com/BodenmillerGroup/IMCDataAnalysis/releases/tag/v1.0.1
+ 4 releaseshttps://github.com/BodenmillerGroup/IMCDataAnalysis/releases
Packages 0https://github.com/orgs/BodenmillerGroup/packages?repo_name=IMCDataAnalysis
Please reload this pagehttps://github.com/BodenmillerGroup/IMCDataAnalysis
Contributorshttps://github.com/BodenmillerGroup/IMCDataAnalysis/graphs/contributors
Please reload this pagehttps://github.com/BodenmillerGroup/IMCDataAnalysis
HTML 99.9% https://github.com/BodenmillerGroup/IMCDataAnalysis/search?l=html
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.