René's URL Explorer Experiment


Title: GitHub - BiomedicalMachineLearning/Spacell

Open Graph Title: GitHub - BiomedicalMachineLearning/Spacell

X Title: GitHub - BiomedicalMachineLearning/Spacell

Description: Contribute to BiomedicalMachineLearning/Spacell development by creating an account on GitHub.

Open Graph Description: Contribute to BiomedicalMachineLearning/Spacell development by creating an account on GitHub.

X Description: Contribute to BiomedicalMachineLearning/Spacell development by creating an account on GitHub.

Mail addresses
quan.nguyen@uq.edu.au
a.su@uqconnect.edu.au
xiao.tan@uqconnect.edu.au

Opengraph URL: https://github.com/BiomedicalMachineLearning/Spacell

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:bccf28c1-7f1b-ce83-8a88-44d02084d616
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC9CA:1E388B:3849ABE:4DCB784:6977D130
html-safe-nonceed353b8771b62e253fa39da668b5ae072055d341b94693f3579adcaecd9c3980
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDOUNBOjFFMzg4QjozODQ5QUJFOjREQ0I3ODQ6Njk3N0QxMzAiLCJ2aXNpdG9yX2lkIjoiNjc5ODgyODQwNDA3MDY2NjU0NCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacdb2a6ab90429ddfa2d2f301b9745285c0b6bc3587514044ead53394acce38e93
hovercard-subject-tagrepository:198547255
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/BiomedicalMachineLearning/Spacell
twitter:imagehttps://opengraph.githubassets.com/8829248fef815c3cad1c631d9856fd124392e8da823d4fa0788b31f8b0316c6a/BiomedicalMachineLearning/Spacell
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/8829248fef815c3cad1c631d9856fd124392e8da823d4fa0788b31f8b0316c6a/BiomedicalMachineLearning/Spacell
og:image:altContribute to BiomedicalMachineLearning/Spacell development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Noneb39e6c26c0326ac7510f4f58f7248053edc1a743c844376b8155c71ef8138521
turbo-cache-controlno-preview
go-importgithub.com/BiomedicalMachineLearning/Spacell git https://github.com/BiomedicalMachineLearning/Spacell.git
octolytics-dimension-user_id45161520
octolytics-dimension-user_loginBiomedicalMachineLearning
octolytics-dimension-repository_id198547255
octolytics-dimension-repository_nwoBiomedicalMachineLearning/Spacell
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id198547255
octolytics-dimension-repository_network_root_nwoBiomedicalMachineLearning/Spacell
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release9db2400e2405e5e571d97a25e1e140cfec8da1a0
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/BiomedicalMachineLearning/Spacell#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FBiomedicalMachineLearning%2FSpacell
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FBiomedicalMachineLearning%2FSpacell
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=BiomedicalMachineLearning%2FSpacell
Reloadhttps://github.com/BiomedicalMachineLearning/Spacell
Reloadhttps://github.com/BiomedicalMachineLearning/Spacell
Reloadhttps://github.com/BiomedicalMachineLearning/Spacell
BiomedicalMachineLearning https://github.com/BiomedicalMachineLearning
Spacellhttps://github.com/BiomedicalMachineLearning/Spacell
Notifications https://github.com/login?return_to=%2FBiomedicalMachineLearning%2FSpacell
Fork 14 https://github.com/login?return_to=%2FBiomedicalMachineLearning%2FSpacell
Star 27 https://github.com/login?return_to=%2FBiomedicalMachineLearning%2FSpacell
MIT license https://github.com/BiomedicalMachineLearning/Spacell/blob/master/LICENSE
27 stars https://github.com/BiomedicalMachineLearning/Spacell/stargazers
14 forks https://github.com/BiomedicalMachineLearning/Spacell/forks
Branches https://github.com/BiomedicalMachineLearning/Spacell/branches
Tags https://github.com/BiomedicalMachineLearning/Spacell/tags
Activity https://github.com/BiomedicalMachineLearning/Spacell/activity
Star https://github.com/login?return_to=%2FBiomedicalMachineLearning%2FSpacell
Notifications https://github.com/login?return_to=%2FBiomedicalMachineLearning%2FSpacell
Code https://github.com/BiomedicalMachineLearning/Spacell
Issues 1 https://github.com/BiomedicalMachineLearning/Spacell/issues
Pull requests 1 https://github.com/BiomedicalMachineLearning/Spacell/pulls
Actions https://github.com/BiomedicalMachineLearning/Spacell/actions
Projects 0 https://github.com/BiomedicalMachineLearning/Spacell/projects
Security 0 https://github.com/BiomedicalMachineLearning/Spacell/security
Insights https://github.com/BiomedicalMachineLearning/Spacell/pulse
Code https://github.com/BiomedicalMachineLearning/Spacell
Issues https://github.com/BiomedicalMachineLearning/Spacell/issues
Pull requests https://github.com/BiomedicalMachineLearning/Spacell/pulls
Actions https://github.com/BiomedicalMachineLearning/Spacell/actions
Projects https://github.com/BiomedicalMachineLearning/Spacell/projects
Security https://github.com/BiomedicalMachineLearning/Spacell/security
Insights https://github.com/BiomedicalMachineLearning/Spacell/pulse
Brancheshttps://github.com/BiomedicalMachineLearning/Spacell/branches
Tagshttps://github.com/BiomedicalMachineLearning/Spacell/tags
https://github.com/BiomedicalMachineLearning/Spacell/branches
https://github.com/BiomedicalMachineLearning/Spacell/tags
56 Commitshttps://github.com/BiomedicalMachineLearning/Spacell/commits/master/
https://github.com/BiomedicalMachineLearning/Spacell/commits/master/
.ideahttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/.idea
.ideahttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/.idea
SpaCell.egg-infohttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/SpaCell.egg-info
SpaCell.egg-infohttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/SpaCell.egg-info
SpaCellhttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/SpaCell
SpaCellhttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/SpaCell
datasethttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/dataset
datasethttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/dataset
disthttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/dist
disthttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/dist
figurehttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/figure
figurehttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/figure
tutorialhttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/tutorial
tutorialhttps://github.com/BiomedicalMachineLearning/Spacell/tree/master/tutorial
.DS_Storehttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/.DS_Store
.DS_Storehttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/.DS_Store
LICENSEhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/LICENSE
LICENSEhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/LICENSE
README.mdhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/README.md
README.mdhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/README.md
requirements.ymlhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/requirements.yml
requirements.ymlhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/requirements.yml
setup.pyhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/setup.py
setup.pyhttps://github.com/BiomedicalMachineLearning/Spacell/blob/master/setup.py
READMEhttps://github.com/BiomedicalMachineLearning/Spacell
MIT licensehttps://github.com/BiomedicalMachineLearning/Spacell
https://github.com/BiomedicalMachineLearning/Spacell/blob/master/figure/logo.png
https://github.com/BiomedicalMachineLearning/Spacell#introduction-to-spacell
https://github.com/BiomedicalMachineLearning/Spacell#installation
condahttps://docs.conda.io/projects/conda/en/latest/index.html
Dockerhttps://www.docker.com
https://github.com/BiomedicalMachineLearning/Spacell#build-status
https://camo.githubusercontent.com/4330b2e4634877048ead240a3a8ea79abeeeb0dd39d17b18217e35b766e0e103/687474703a2f2f6d6c2d63692e616d642e636f6d3a32313039362f6a6f622f74656e736f72666c6f772d726f636d2d72656c656173652f62616467652f69636f6e
Condahttps://docs.conda.io/projects/conda/en/latest/index.html
Dockerhttps://www.docker.com
PyPIhttps://pypi.org
https://camo.githubusercontent.com/4330b2e4634877048ead240a3a8ea79abeeeb0dd39d17b18217e35b766e0e103/687474703a2f2f6d6c2d63692e616d642e636f6d3a32313039362f6a6f622f74656e736f72666c6f772d726f636d2d72656c656173652f62616467652f69636f6e
Condahttps://docs.conda.io/projects/conda/en/latest/index.html
Dockerhttps://www.docker.com
PyPIhttps://pypi.org
https://camo.githubusercontent.com/4330b2e4634877048ead240a3a8ea79abeeeb0dd39d17b18217e35b766e0e103/687474703a2f2f6d6c2d63692e616d642e636f6d3a32313039362f6a6f622f74656e736f72666c6f772d726f636d2d72656c656173652f62616467652f69636f6e
Condahttps://docs.conda.io/projects/conda/en/latest/index.html
Dockerhttps://www.docker.com
PyPIhttps://pypi.org
https://camo.githubusercontent.com/4330b2e4634877048ead240a3a8ea79abeeeb0dd39d17b18217e35b766e0e103/687474703a2f2f6d6c2d63692e616d642e636f6d3a32313039362f6a6f622f74656e736f72666c6f772d726f636d2d72656c656173652f62616467652f69636f6e
Dockerhttps://www.docker.com
PyPIhttps://pypi.org
https://github.com/BiomedicalMachineLearning/Spacell#usage
https://github.com/BiomedicalMachineLearning/Spacell#configurations
https://github.com/BiomedicalMachineLearning/Spacell#1-image-preprocessing
https://github.com/BiomedicalMachineLearning/Spacell#2-count-matrix-preprocessing
https://github.com/BiomedicalMachineLearning/Spacell#3-generate-paired-image-and-gene-count-training-dataset
https://github.com/BiomedicalMachineLearning/Spacell#4-classification
https://github.com/BiomedicalMachineLearning/Spacell#5-clustering
https://github.com/BiomedicalMachineLearning/Spacell#6-clustering-validation-and-quantification
https://github.com/BiomedicalMachineLearning/Spacell#results
https://github.com/BiomedicalMachineLearning/Spacell#classification-of-als-disease-stages
https://github.com/BiomedicalMachineLearning/Spacell/blob/master/figure/age_roc_combine.png
https://github.com/BiomedicalMachineLearning/Spacell/blob/master/figure/age_confusion_matrix_combine.png
https://github.com/BiomedicalMachineLearning/Spacell#clustering-for-finding-prostate-cancer-region
https://github.com/BiomedicalMachineLearning/Spacell/blob/master/figure/clustering_1.png
https://github.com/BiomedicalMachineLearning/Spacell#clustering-for-finding-inflamed-stromal
https://github.com/BiomedicalMachineLearning/Spacell/blob/master/figure/clustering_2.png
https://github.com/BiomedicalMachineLearning/Spacell#clustering-for-anatomical-regions-in-mouse-olfactory-bulb-high-density-st-dataset
https://github.com/BiomedicalMachineLearning/Spacell/blob/master/figure/clustering_3.png
https://github.com/BiomedicalMachineLearning/Spacell#dataset
ALS (Amyotrophic lateral sclerosis)https://als-st.nygenome.org
prostate cancerhttps://doi.org/10.1038/s41467-018-04724-5
HDSThttps://www.biorxiv.org/content/10.1101/563338v1
https://github.com/BiomedicalMachineLearning/Spacell#citing-spacell
Xiao Tan, Andrew T Su, Minh Tran, Quan Nguyen (2019). SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells.https://github.com/BiomedicalMachineLearning/Spacell/blob/master
https://github.com/BiomedicalMachineLearning/Spacell#the-team
Readme https://github.com/BiomedicalMachineLearning/Spacell#readme-ov-file
MIT license https://github.com/BiomedicalMachineLearning/Spacell#MIT-1-ov-file
Please reload this pagehttps://github.com/BiomedicalMachineLearning/Spacell
Activityhttps://github.com/BiomedicalMachineLearning/Spacell/activity
27 starshttps://github.com/BiomedicalMachineLearning/Spacell/stargazers
1 watchinghttps://github.com/BiomedicalMachineLearning/Spacell/watchers
14 forkshttps://github.com/BiomedicalMachineLearning/Spacell/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FBiomedicalMachineLearning%2FSpacell&report=BiomedicalMachineLearning+%28user%29
Releaseshttps://github.com/BiomedicalMachineLearning/Spacell/releases
Packages 0https://github.com/users/BiomedicalMachineLearning/packages?repo_name=Spacell
Please reload this pagehttps://github.com/BiomedicalMachineLearning/Spacell
Contributors 3https://github.com/BiomedicalMachineLearning/Spacell/graphs/contributors
Please reload this pagehttps://github.com/BiomedicalMachineLearning/Spacell
Jupyter Notebook 99.8% https://github.com/BiomedicalMachineLearning/Spacell/search?l=jupyter-notebook
Python 0.2% https://github.com/BiomedicalMachineLearning/Spacell/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.