René's URL Explorer Experiment


Title: GitHub - Anuj52/HackBio: A spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Learning agent acting as a shared bacterial brain. · GitHub

Open Graph Title: GitHub - Anuj52/HackBio: A spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Learning agent acting as a shared bacterial brain.

X Title: GitHub - Anuj52/HackBio: A spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Learning agent acting as a shared bacterial brain.

Description: A spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Learning agent acting as a shared bacterial brain. - Anuj52/HackBio

Open Graph Description: A spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Lear...

X Description: A spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Lear...

Opengraph URL: https://github.com/Anuj52/HackBio

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:a882c3fa-3bbf-3c58-e649-094dcf36bad5
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8822:3D572F:4E983B:6843AF:6A615392
html-safe-nonce843db3b04dcb24cf988290148a768414156b6671d9451a696c476c9b9f2d0e22
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4ODIyOjNENTcyRjo0RTk4M0I6Njg0M0FGOjZBNjE1MzkyIiwidmlzaXRvcl9pZCI6IjM4Mjg1NjU4NjMwMDgzODgwMiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmaca935c187c94c5702a1b054d6eef8154965f093d9ea3e3ebbf3e230a1a6dbc34e
hovercard-subject-tagrepository:1180151797
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/Anuj52/HackBio
twitter:imagehttps://opengraph.githubassets.com/84b91667ac3d79fd0d6ddce5dad455142e8d0b1a90623c6ccbd4230f3b721a6a/Anuj52/HackBio
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/84b91667ac3d79fd0d6ddce5dad455142e8d0b1a90623c6ccbd4230f3b721a6a/Anuj52/HackBio
og:image:altA spatially-explicit agent-based simulation of bacterial evolution under antibiotic stress. Features a React-like dashboard, pure physical/biological modelling, and a Dueling DQN Reinforcement Lear...
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None35b919fdb8e6752d2ed95a144e761ca5e924557563e2ed0a5ebf6c4430cdeeb6
turbo-cache-controlno-cache
go-importgithub.com/Anuj52/HackBio git https://github.com/Anuj52/HackBio.git
octolytics-dimension-user_id95843211
octolytics-dimension-user_loginAnuj52
octolytics-dimension-repository_id1180151797
octolytics-dimension-repository_nwoAnuj52/HackBio
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1180151797
octolytics-dimension-repository_network_root_nwoAnuj52/HackBio
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release1e22b08b60ccb67c3791f565bed248565260e611
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/Anuj52/HackBio#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FAnuj52%2FHackBio
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
Code QualityEnforce quality at mergehttps://github.com/features/code-quality
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FAnuj52%2FHackBio
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=Anuj52%2FHackBio
Reloadhttps://github.com/Anuj52/HackBio
Reloadhttps://github.com/Anuj52/HackBio
Reloadhttps://github.com/Anuj52/HackBio
Anuj52 https://github.com/Anuj52
HackBiohttps://github.com/Anuj52/HackBio
Notifications https://github.com/login?return_to=%2FAnuj52%2FHackBio
Fork 0 https://github.com/login?return_to=%2FAnuj52%2FHackBio
Star 1 https://github.com/login?return_to=%2FAnuj52%2FHackBio
Code https://github.com/Anuj52/HackBio
Issues 0 https://github.com/Anuj52/HackBio/issues
Pull requests 0 https://github.com/Anuj52/HackBio/pulls
Actions https://github.com/Anuj52/HackBio/actions
Projects https://github.com/Anuj52/HackBio/projects
Security and quality 0 https://github.com/Anuj52/HackBio/security
Insights https://github.com/Anuj52/HackBio/pulse
Code https://github.com/Anuj52/HackBio
Issues https://github.com/Anuj52/HackBio/issues
Pull requests https://github.com/Anuj52/HackBio/pulls
Actions https://github.com/Anuj52/HackBio/actions
Projects https://github.com/Anuj52/HackBio/projects
Security and quality https://github.com/Anuj52/HackBio/security
Insights https://github.com/Anuj52/HackBio/pulse
https://github.com/Anuj52/HackBio
Brancheshttps://github.com/Anuj52/HackBio/branches
Tagshttps://github.com/Anuj52/HackBio/tags
https://github.com/Anuj52/HackBio/branches
https://github.com/Anuj52/HackBio/tags
9 Commitshttps://github.com/Anuj52/HackBio/commits/main/
https://github.com/Anuj52/HackBio/commits/main/
outputhttps://github.com/Anuj52/HackBio/tree/main/output
outputhttps://github.com/Anuj52/HackBio/tree/main/output
statichttps://github.com/Anuj52/HackBio/tree/main/static
statichttps://github.com/Anuj52/HackBio/tree/main/static
templateshttps://github.com/Anuj52/HackBio/tree/main/templates
templateshttps://github.com/Anuj52/HackBio/tree/main/templates
testshttps://github.com/Anuj52/HackBio/tree/main/tests
testshttps://github.com/Anuj52/HackBio/tree/main/tests
.dockerignorehttps://github.com/Anuj52/HackBio/blob/main/.dockerignore
.dockerignorehttps://github.com/Anuj52/HackBio/blob/main/.dockerignore
.gitignorehttps://github.com/Anuj52/HackBio/blob/main/.gitignore
.gitignorehttps://github.com/Anuj52/HackBio/blob/main/.gitignore
Dockerfilehttps://github.com/Anuj52/HackBio/blob/main/Dockerfile
Dockerfilehttps://github.com/Anuj52/HackBio/blob/main/Dockerfile
README.mdhttps://github.com/Anuj52/HackBio/blob/main/README.md
README.mdhttps://github.com/Anuj52/HackBio/blob/main/README.md
TEAM.txthttps://github.com/Anuj52/HackBio/blob/main/TEAM.txt
TEAM.txthttps://github.com/Anuj52/HackBio/blob/main/TEAM.txt
agent.pyhttps://github.com/Anuj52/HackBio/blob/main/agent.py
agent.pyhttps://github.com/Anuj52/HackBio/blob/main/agent.py
config.yamlhttps://github.com/Anuj52/HackBio/blob/main/config.yaml
config.yamlhttps://github.com/Anuj52/HackBio/blob/main/config.yaml
dashboard.pyhttps://github.com/Anuj52/HackBio/blob/main/dashboard.py
dashboard.pyhttps://github.com/Anuj52/HackBio/blob/main/dashboard.py
environment.pyhttps://github.com/Anuj52/HackBio/blob/main/environment.py
environment.pyhttps://github.com/Anuj52/HackBio/blob/main/environment.py
gpu_utils.pyhttps://github.com/Anuj52/HackBio/blob/main/gpu_utils.py
gpu_utils.pyhttps://github.com/Anuj52/HackBio/blob/main/gpu_utils.py
main.pyhttps://github.com/Anuj52/HackBio/blob/main/main.py
main.pyhttps://github.com/Anuj52/HackBio/blob/main/main.py
mesa_model.pyhttps://github.com/Anuj52/HackBio/blob/main/mesa_model.py
mesa_model.pyhttps://github.com/Anuj52/HackBio/blob/main/mesa_model.py
requirements.txthttps://github.com/Anuj52/HackBio/blob/main/requirements.txt
requirements.txthttps://github.com/Anuj52/HackBio/blob/main/requirements.txt
rl_agent.pyhttps://github.com/Anuj52/HackBio/blob/main/rl_agent.py
rl_agent.pyhttps://github.com/Anuj52/HackBio/blob/main/rl_agent.py
simulate.pyhttps://github.com/Anuj52/HackBio/blob/main/simulate.py
simulate.pyhttps://github.com/Anuj52/HackBio/blob/main/simulate.py
test_results.txthttps://github.com/Anuj52/HackBio/blob/main/test_results.txt
test_results.txthttps://github.com/Anuj52/HackBio/blob/main/test_results.txt
tr.txthttps://github.com/Anuj52/HackBio/blob/main/tr.txt
tr.txthttps://github.com/Anuj52/HackBio/blob/main/tr.txt
visualize.pyhttps://github.com/Anuj52/HackBio/blob/main/visualize.py
visualize.pyhttps://github.com/Anuj52/HackBio/blob/main/visualize.py
READMEhttps://github.com/Anuj52/HackBio
https://github.com/Anuj52/HackBio#bacterial-colony-dynamics--agent-based-model
http://52.66.196.251/http://52.66.196.251/
https://github.com/Anuj52/HackBio#what-it-does
https://github.com/Anuj52/HackBio#reinforcement-learning--dueling-dqn--per
https://github.com/Anuj52/HackBio#architecture
https://github.com/Anuj52/HackBio#state-space-14-dimensions
https://github.com/Anuj52/HackBio#action-space-7-discrete
https://github.com/Anuj52/HackBio#reward-function
https://github.com/Anuj52/HackBio#network
https://github.com/Anuj52/HackBio#3d-colony-structure
https://github.com/Anuj52/HackBio#physics--cardinal-growth-models
https://github.com/Anuj52/HackBio#cardinal-temperature-model-rosso-et-al-1993
https://github.com/Anuj52/HackBio#cardinal-ph-model-rosso-et-al-1995
https://github.com/Anuj52/HackBio#pressure-model-abe--horikoshi-2001
https://github.com/Anuj52/HackBio#gpu-acceleration
https://github.com/Anuj52/HackBio#mesa-framework-integration
https://github.com/Anuj52/HackBio#core-equations
https://github.com/Anuj52/HackBio#results
https://github.com/Anuj52/HackBio#population--genotype-dynamics
https://github.com/Anuj52/HackBio/blob/main/charts/evolution_curves.png
https://github.com/Anuj52/HackBio#genotype-frequency-over-time
https://github.com/Anuj52/HackBio/blob/main/charts/genotype_frequency.png
https://github.com/Anuj52/HackBio#resource--antibiotic-dynamics
https://github.com/Anuj52/HackBio/blob/main/charts/resource_dynamics.png
https://github.com/Anuj52/HackBio#phase-distribution
https://github.com/Anuj52/HackBio/blob/main/charts/phase_distribution.png
https://github.com/Anuj52/HackBio#cooperation-vs-competition
https://github.com/Anuj52/HackBio/blob/main/charts/cooperation_competition.png
https://github.com/Anuj52/HackBio#fitness-evolution
https://github.com/Anuj52/HackBio/blob/main/charts/fitness_evolution.png
https://github.com/Anuj52/HackBio#spatial-colony-density-final-epoch
https://github.com/Anuj52/HackBio/blob/main/charts/spatial_colony_density.png
https://github.com/Anuj52/HackBio#spatial-antibiotic-gradient
https://github.com/Anuj52/HackBio/blob/main/charts/spatial_antibiotic.png
https://github.com/Anuj52/HackBio#spatial-genotype-map
https://github.com/Anuj52/HackBio/blob/main/charts/spatial_genotype_map.png
https://github.com/Anuj52/HackBio#ltee-validation
lab_bacterial_growthhttps://github.com/sgroverbiern/lab_bacterial_growth
https://github.com/Anuj52/HackBio#what-the-ltee-shows-vs-what-our-simulation-reproduces
https://github.com/Anuj52/HackBio#biological-fixes-applied-during-validation
https://github.com/Anuj52/HackBio#configuration
config.yamlhttps://github.com/Anuj52/HackBio/blob/main/config.yaml
https://github.com/Anuj52/HackBio#project-structure
https://github.com/Anuj52/HackBio#local-setup
https://github.com/Anuj52/HackBio#requirements
https://github.com/Anuj52/HackBio#install--run
https://github.com/Anuj52/HackBio#cli-options
https://github.com/Anuj52/HackBio#testing
https://github.com/Anuj52/HackBio#docker
https://github.com/Anuj52/HackBio#live-dashboard-features
https://github.com/Anuj52/HackBio#team
https://github.com/Anuj52/HackBio#references
python https://github.com/topics/python
bioinformatics https://github.com/topics/bioinformatics
reinforcement-learning https://github.com/topics/reinforcement-learning
simulation https://github.com/topics/simulation
complex-systems https://github.com/topics/complex-systems
evolutionary-algorithm https://github.com/topics/evolutionary-algorithm
agent-based-model https://github.com/topics/agent-based-model
Readme https://github.com/Anuj52/HackBio#readme-ov-file
Please reload this pagehttps://github.com/Anuj52/HackBio
Activityhttps://github.com/Anuj52/HackBio/activity
0 forkshttps://github.com/Anuj52/HackBio/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FAnuj52%2FHackBio&report=Anuj52+%28user%29
Contributorshttps://github.com/Anuj52/HackBio/graphs/contributors
Please reload this pagehttps://github.com/Anuj52/HackBio
Python 72.4% https://github.com/Anuj52/HackBio/search?l=python
JavaScript 15.2% https://github.com/Anuj52/HackBio/search?l=javascript
HTML 6.3% https://github.com/Anuj52/HackBio/search?l=html
CSS 5.9% https://github.com/Anuj52/HackBio/search?l=css
Dockerfile 0.2% https://github.com/Anuj52/HackBio/search?l=dockerfile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.