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Title: openprotein.align — OpenProtein-Docs documentation

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Domain: docs.openprotein.ai

Links:

Skip to main contenthttps://docs.openprotein.ai/python-api/api-reference/align.html#main-content
https://docs.openprotein.ai/index.html
Getting Started https://docs.openprotein.ai/getting-started/index.html
Web App https://docs.openprotein.ai/web-app/index.html
Python API https://docs.openprotein.ai/python-api/index.html
REST API https://docs.openprotein.ai/rest-api/index.html
Walkthroughs https://docs.openprotein.ai/walkthroughs/index.html
Resources https://docs.openprotein.ai/resources/index.html
Log inhttps://app.openprotein.ai/
Contacthttps://www.openprotein.ai/contact
Getting Started https://docs.openprotein.ai/getting-started/index.html
Web App https://docs.openprotein.ai/web-app/index.html
Python API https://docs.openprotein.ai/python-api/index.html
REST API https://docs.openprotein.ai/rest-api/index.html
Walkthroughs https://docs.openprotein.ai/walkthroughs/index.html
Resources https://docs.openprotein.ai/resources/index.html
Log inhttps://app.openprotein.ai/
Contacthttps://www.openprotein.ai/contact
Overviewhttps://docs.openprotein.ai/python-api/index.html
Installationhttps://docs.openprotein.ai/python-api/installation.html
Quickstarthttps://docs.openprotein.ai/python-api/quickstart.html
Foundation Modelshttps://docs.openprotein.ai/python-api/foundation-models/index.html
Model metadatahttps://docs.openprotein.ai/python-api/foundation-models/model-metadata.html
SVD and embeddingshttps://docs.openprotein.ai/python-api/foundation-models/SVD-embeddings.html
Logitshttps://docs.openprotein.ai/python-api/foundation-models/logits.html
Attention mapshttps://docs.openprotein.ai/python-api/foundation-models/attention-maps.html
Using AbLang2https://docs.openprotein.ai/python-api/foundation-models/Using_AbLang2.html
PoEThttps://docs.openprotein.ai/python-api/poet/index.html
Creating an MSAhttps://docs.openprotein.ai/python-api/poet/creating-MSA.html
Creating a prompthttps://docs.openprotein.ai/python-api/poet/creating-prompt.html
Scoring sequenceshttps://docs.openprotein.ai/python-api/poet/scoring-sequences.html
Single site analysishttps://docs.openprotein.ai/python-api/poet/single-site-analysis.html
Generating sequenceshttps://docs.openprotein.ai/python-api/poet/generating-sequences.html
Property Regression Modelshttps://docs.openprotein.ai/python-api/property-regression-models/index.html
Uploading datahttps://docs.openprotein.ai/python-api/property-regression-models/uploading-data.html
Training modelshttps://docs.openprotein.ai/python-api/property-regression-models/training-models.html
Designing sequenceshttps://docs.openprotein.ai/python-api/property-regression-models/designing-sequences.html
Predicting sequenceshttps://docs.openprotein.ai/python-api/property-regression-models/predicting-sequences.html
Single site analysishttps://docs.openprotein.ai/python-api/property-regression-models/single-site-analysis.html
Structure Predictionhttps://docs.openprotein.ai/python-api/structure-prediction/index.html
Examining structure prediction modelshttps://docs.openprotein.ai/python-api/structure-prediction/Examining_structure_prediction_models.html
Using ESMFold2https://docs.openprotein.ai/python-api/structure-prediction/Using_ESMFold2.html
Using AlphaFold2https://docs.openprotein.ai/python-api/structure-prediction/Using_AlphaFold2.html
Using Boltz-1 and Boltz-2https://docs.openprotein.ai/python-api/structure-prediction/Using_Boltz_1_and_Boltz_2.html
Using Protenix-v2https://docs.openprotein.ai/python-api/structure-prediction/Using_Protenix-v2.html
Using RosettaFold-3https://docs.openprotein.ai/python-api/structure-prediction/Using_RosettaFold3.html
Structure Generationhttps://docs.openprotein.ai/python-api/structure-generation/index.html
Using RFdiffusionhttps://docs.openprotein.ai/python-api/structure-generation/Using_RFdiffusion.html
Using BoltzGenhttps://docs.openprotein.ai/python-api/structure-generation/Using_BoltzGen.html
API referencehttps://docs.openprotein.ai/python-api/api-reference/index.html
openproteinhttps://docs.openprotein.ai/python-api/api-reference/openprotein.html
openprotein.moleculeshttps://docs.openprotein.ai/python-api/api-reference/molecules.html
openprotein.datahttps://docs.openprotein.ai/python-api/api-reference/data.html
openprotein.jobshttps://docs.openprotein.ai/python-api/api-reference/jobs.html
openprotein.alignhttps://docs.openprotein.ai/python-api/api-reference/align.html
openprotein.prompthttps://docs.openprotein.ai/python-api/api-reference/prompt.html
openprotein.embeddingshttps://docs.openprotein.ai/python-api/api-reference/embedding.html
openprotein.predictorhttps://docs.openprotein.ai/python-api/api-reference/predictor.html
openprotein.designhttps://docs.openprotein.ai/python-api/api-reference/design.html
openprotein.foldhttps://docs.openprotein.ai/python-api/api-reference/fold.html
openprotein.modelshttps://docs.openprotein.ai/python-api/api-reference/models.html
https://docs.openprotein.ai/index.html
Python API Documentationhttps://docs.openprotein.ai/python-api/index.html
API referencehttps://docs.openprotein.ai/python-api/api-reference/index.html
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein-align
#https://docs.openprotein.ai/python-api/api-reference/align.html#interface
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.mafft
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.mafft
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.mafft_file
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.mafft_file
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.clustalo
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.clustalo
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.clustalo_file
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.clustalo_file
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.abnumber
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.abnumber
AbNumberSchemehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.abnumber_file
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.abnumber_file
AbNumberSchemehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.upload_msa
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.upload_msa
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.create_msa
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.create_msa
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.upload_prompt
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.upload_prompt
PromptJobhttps://docs.openprotein.ai/python-api/api-reference/prompt.html#openprotein.prompt.PromptJob
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.get_prompt
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.get_prompt
Jobhttps://docs.openprotein.ai/python-api/api-reference/jobs.html#openprotein.jobs.Job
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.get_seed
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.get_seed
Jobhttps://docs.openprotein.ai/python-api/api-reference/jobs.html#openprotein.jobs.Job
[source]https://docs.openprotein.ai/_modules/openprotein/align/align.html#AlignAPI.get_msa
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.get_msa
Jobhttps://docs.openprotein.ai/python-api/api-reference/jobs.html#openprotein.jobs.Job
#https://docs.openprotein.ai/python-api/api-reference/align.html#abnumber-schemes
[source]https://docs.openprotein.ai/_modules/openprotein/align/schemas.html#AbNumberScheme
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.IMGT
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.CHOTHIA
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.KABAT
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.AHO
#https://docs.openprotein.ai/python-api/api-reference/align.html#results
[source]https://docs.openprotein.ai/_modules/openprotein/align/msa.html#MSAFuture
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
[source]https://docs.openprotein.ai/_modules/openprotein/align/msa.html#MSAFuture.sample_prompt
#https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture.sample_prompt
Prompthttps://docs.openprotein.ai/python-api/api-reference/prompt.html#openprotein.prompt.Prompt
Interfacehttps://docs.openprotein.ai/python-api/api-reference/align.html#interface
AlignAPIhttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI
AlignAPI.mafft()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.mafft
AlignAPI.mafft_file()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.mafft_file
AlignAPI.clustalo()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.clustalo
AlignAPI.clustalo_file()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.clustalo_file
AlignAPI.abnumber()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.abnumber
AlignAPI.abnumber_file()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.abnumber_file
AlignAPI.upload_msa()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.upload_msa
AlignAPI.create_msa()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.create_msa
AlignAPI.upload_prompt()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.upload_prompt
AlignAPI.get_prompt()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.get_prompt
AlignAPI.get_seed()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.get_seed
AlignAPI.get_msa()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.AlignAPI.get_msa
AbNumber schemeshttps://docs.openprotein.ai/python-api/api-reference/align.html#abnumber-schemes
AbNumberSchemehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme
AbNumberScheme.IMGThttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.IMGT
AbNumberScheme.CHOTHIAhttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.CHOTHIA
AbNumberScheme.KABAThttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.KABAT
AbNumberScheme.AHOhttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.schemas.AbNumberScheme.AHO
Resultshttps://docs.openprotein.ai/python-api/api-reference/align.html#results
MSAFuturehttps://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture
MSAFuture.sample_prompt()https://docs.openprotein.ai/python-api/api-reference/align.html#openprotein.align.MSAFuture.sample_prompt
Sphinxhttps://www.sphinx-doc.org/
PyData Sphinx Themehttps://pydata-sphinx-theme.readthedocs.io/en/stable/index.html

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