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Title: Command line tools overview — Bio-Formats 8.4.0 documentation

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Domain: docs.openmicroscopy.org

readthedocs-addons-api-version1
readthedocs-project-slugbio-formats
readthedocs-version-slugstable
readthedocs-resolver-filename/users/comlinetools/index.html
readthedocs-http-status200

Links:

Bio-Formats https://docs.openmicroscopy.org/bio-formats/latest/index.html
About Bio-Formatshttps://docs.openmicroscopy.org/bio-formats/latest/about/index.html
User Informationhttps://docs.openmicroscopy.org/bio-formats/latest/users/index.html
Using Bio-Formats with ImageJ and Fijihttps://docs.openmicroscopy.org/bio-formats/latest/users/index.html#using-bio-formats-with-imagej-and-fiji
Command line toolshttps://docs.openmicroscopy.org/bio-formats/latest/users/index.html#command-line-tools
Command line tools overviewhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html
Installationhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#installation
Tools availablehttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#tools-available
Command-line environmenthttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#command-line-environment
Using the tools directly from sourcehttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#using-the-tools-directly-from-source
Version checkerhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#version-checker
Profilinghttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#profiling
Displaying images and metadatahttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/display.html
Converting a file to different formathttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/conversion.html
Validating XML in an OME-TIFFhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/xml-validation.html
Editing XML in an OME-TIFFhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/edit.html
List formats by domainhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/domainlist.html
List supported file formatshttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/formatlist.html
Display file in ImageJhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/ijview.html
Format XML datahttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/xmlindent.html
Create a high-content screen for testinghttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/mkfake.html
“Precompressed” tileshttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/precompressed.html
Using Bio-Formats in MATLAB/Octavehttps://docs.openmicroscopy.org/bio-formats/latest/users/index.html#using-bio-formats-in-matlab-octave
Third-party applicationshttps://docs.openmicroscopy.org/bio-formats/latest/users/index.html#third-party-applications
Developer Documentationhttps://docs.openmicroscopy.org/bio-formats/latest/developers/index.html
Formatshttps://docs.openmicroscopy.org/bio-formats/latest/formats/index.html
Version historyhttps://docs.openmicroscopy.org/bio-formats/latest/about/whats-new.html
Reporting a bughttps://docs.openmicroscopy.org/bio-formats/latest/about/bug-reporting.html
Bio-Formatshttps://docs.openmicroscopy.org/bio-formats/latest/index.html
https://docs.openmicroscopy.org/bio-formats/latest/index.html
User Informationhttps://docs.openmicroscopy.org/bio-formats/latest/users/index.html
View page sourcehttps://docs.openmicroscopy.org/bio-formats/latest/_sources/users/comlinetools/index.rst.txt
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#command-line-tools-overview
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#installation
bftools.ziphttps://downloads.openmicroscopy.org/bio-formats/8.4.0/artifacts/bftools.zip
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#tools-available
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-showinf
Displaying images and metadatahttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/display.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-ijview
Display file in ImageJhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/ijview.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-bfconvert
Converting a file to different formathttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/conversion.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-formatlist
List supported file formatshttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/formatlist.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-xmlindent
Format XML datahttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/xmlindent.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-xmlvalid
Validating XML in an OME-TIFFhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/xml-validation.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-tiffcomment
Editing XML in an OME-TIFFhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/edit.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-domainlist
List formats by domainhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/domainlist.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-mkfake
Create a high-content screen for testinghttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/mkfake.html
Validating XML in an OME-TIFFhttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/xml-validation.html
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#command-line-environment
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-BF_CP
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-BF_FLAGS
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-BF_MAX_MEM
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-BF_PROFILE
Profilinghttps://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#profiling
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#term-BF_PROFILE_DEPTH
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#using-the-tools-directly-from-source
Obtaining and building Bio-Formatshttps://docs.openmicroscopy.org/bio-formats/latest/developers/building-bioformats.html#source-obtain-and-build
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#version-checker
https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/index.html#profiling
HPROFhttps://docs.oracle.com/javase/7/docs/technotes/samples/hprof.html
Previoushttps://docs.openmicroscopy.org/bio-formats/latest/users/imagej/options.html
Next https://docs.openmicroscopy.org/bio-formats/latest/users/comlinetools/display.html
Sphinxhttps://www.sphinx-doc.org/
themehttps://github.com/readthedocs/sphinx_rtd_theme
Read the Docshttps://readthedocs.org

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