René's URL Explorer Experiment


Title: GitHub - MouseLand/cellpose: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities · GitHub

Open Graph Title: GitHub - MouseLand/cellpose: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

X Title: GitHub - MouseLand/cellpose: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Description: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose

Open Graph Description: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose

X Description: a generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose

Opengraph URL: https://github.com/MouseLand/cellpose

X: @github

direct link

Domain: www.github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5a667eb1-fc0c-5f52-9f5f-cfe5ee6c49af
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id83A6:2CAFF1:374BFF2:493861E:6A6557C7
html-safe-nonce2fd45b9a454fed7d09ea3f126087a0777ddce8fb9526f956bbb2a9003e298c21
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4M0E2OjJDQUZGMTozNzRCRkYyOjQ5Mzg2MUU6NkE2NTU3QzciLCJ2aXNpdG9yX2lkIjoiNDIwMDU1NzA2NjE0NjEwOTM4MyIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac2e6ae29234e16f40c23106054976ccc7027f4c47dfe494b16e2ab831d6582bf8
hovercard-subject-tagrepository:237686847
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/mouseland/cellpose
twitter:imagehttps://repository-images.githubusercontent.com/237686847/007d8780-460c-11ea-9a4e-2fed096278b5
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/237686847/007d8780-460c-11ea-9a4e-2fed096278b5
og:image:alta generalist algorithm for cellular segmentation with human-in-the-loop capabilities - MouseLand/cellpose
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None52c76df668885aaff23b50bdca1fa1ea44ac9c1553e888ebc70ff1e4daa4625b
turbo-cache-controlno-cache
go-importgithub.com/MouseLand/cellpose git https://github.com/MouseLand/cellpose.git
octolytics-dimension-user_id28845184
octolytics-dimension-user_loginMouseLand
octolytics-dimension-repository_id237686847
octolytics-dimension-repository_nwoMouseLand/cellpose
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id237686847
octolytics-dimension-repository_network_root_nwoMouseLand/cellpose
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release309153364422b3c499922d1a2a6404910a58ed8e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttp://www.github.com/mouseland/cellpose#start-of-content
http://www.github.com/
Sign in http://www.github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmouseland%2Fcellpose
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
Code QualityEnforce quality at mergehttps://github.com/features/code-quality
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in http://www.github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmouseland%2Fcellpose
Sign up http://www.github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=MouseLand%2Fcellpose
Reloadhttp://www.github.com/mouseland/cellpose
Reloadhttp://www.github.com/mouseland/cellpose
Reloadhttp://www.github.com/mouseland/cellpose
Please reload this pagehttp://www.github.com/mouseland/cellpose
MouseLand http://www.github.com/MouseLand
cellposehttp://www.github.com/MouseLand/cellpose
Notifications http://www.github.com/login?return_to=%2FMouseLand%2Fcellpose
Fork 641 http://www.github.com/login?return_to=%2FMouseLand%2Fcellpose
Star 2.3k http://www.github.com/login?return_to=%2FMouseLand%2Fcellpose
Code http://www.github.com/MouseLand/cellpose
Issues 26 http://www.github.com/MouseLand/cellpose/issues
Pull requests 37 http://www.github.com/MouseLand/cellpose/pulls
Actions http://www.github.com/MouseLand/cellpose/actions
Projects http://www.github.com/MouseLand/cellpose/projects
Security and quality 0 http://www.github.com/MouseLand/cellpose/security
Insights http://www.github.com/MouseLand/cellpose/pulse
Code http://www.github.com/MouseLand/cellpose
Issues http://www.github.com/MouseLand/cellpose/issues
Pull requests http://www.github.com/MouseLand/cellpose/pulls
Actions http://www.github.com/MouseLand/cellpose/actions
Projects http://www.github.com/MouseLand/cellpose/projects
Security and quality http://www.github.com/MouseLand/cellpose/security
Insights http://www.github.com/MouseLand/cellpose/pulse
http://www.github.com/MouseLand/cellpose
Brancheshttp://www.github.com/MouseLand/cellpose/branches
Tagshttp://www.github.com/MouseLand/cellpose/tags
http://www.github.com/MouseLand/cellpose/branches
http://www.github.com/MouseLand/cellpose/tags
1,629 Commitshttp://www.github.com/MouseLand/cellpose/commits/main/
http://www.github.com/MouseLand/cellpose/commits/main/
.githubhttp://www.github.com/MouseLand/cellpose/tree/main/.github
.githubhttp://www.github.com/MouseLand/cellpose/tree/main/.github
cellposehttp://www.github.com/MouseLand/cellpose/tree/main/cellpose
cellposehttp://www.github.com/MouseLand/cellpose/tree/main/cellpose
docshttp://www.github.com/MouseLand/cellpose/tree/main/docs
docshttp://www.github.com/MouseLand/cellpose/tree/main/docs
notebookshttp://www.github.com/MouseLand/cellpose/tree/main/notebooks
notebookshttp://www.github.com/MouseLand/cellpose/tree/main/notebooks
paperhttp://www.github.com/MouseLand/cellpose/tree/main/paper
paperhttp://www.github.com/MouseLand/cellpose/tree/main/paper
pyinstallerhttp://www.github.com/MouseLand/cellpose/tree/main/pyinstaller
pyinstallerhttp://www.github.com/MouseLand/cellpose/tree/main/pyinstaller
testshttp://www.github.com/MouseLand/cellpose/tree/main/tests
testshttp://www.github.com/MouseLand/cellpose/tree/main/tests
.gitignorehttp://www.github.com/MouseLand/cellpose/blob/main/.gitignore
.gitignorehttp://www.github.com/MouseLand/cellpose/blob/main/.gitignore
.readthedocs.ymlhttp://www.github.com/MouseLand/cellpose/blob/main/.readthedocs.yml
.readthedocs.ymlhttp://www.github.com/MouseLand/cellpose/blob/main/.readthedocs.yml
.style.yapfhttp://www.github.com/MouseLand/cellpose/blob/main/.style.yapf
.style.yapfhttp://www.github.com/MouseLand/cellpose/blob/main/.style.yapf
CONTRIBUTING.mdhttp://www.github.com/MouseLand/cellpose/blob/main/CONTRIBUTING.md
CONTRIBUTING.mdhttp://www.github.com/MouseLand/cellpose/blob/main/CONTRIBUTING.md
LICENSEhttp://www.github.com/MouseLand/cellpose/blob/main/LICENSE
LICENSEhttp://www.github.com/MouseLand/cellpose/blob/main/LICENSE
MANIFEST.inhttp://www.github.com/MouseLand/cellpose/blob/main/MANIFEST.in
MANIFEST.inhttp://www.github.com/MouseLand/cellpose/blob/main/MANIFEST.in
README.mdhttp://www.github.com/MouseLand/cellpose/blob/main/README.md
README.mdhttp://www.github.com/MouseLand/cellpose/blob/main/README.md
codecov.ymlhttp://www.github.com/MouseLand/cellpose/blob/main/codecov.yml
codecov.ymlhttp://www.github.com/MouseLand/cellpose/blob/main/codecov.yml
conftest.pyhttp://www.github.com/MouseLand/cellpose/blob/main/conftest.py
conftest.pyhttp://www.github.com/MouseLand/cellpose/blob/main/conftest.py
environment.ymlhttp://www.github.com/MouseLand/cellpose/blob/main/environment.yml
environment.ymlhttp://www.github.com/MouseLand/cellpose/blob/main/environment.yml
imagej_roi_converter.pyhttp://www.github.com/MouseLand/cellpose/blob/main/imagej_roi_converter.py
imagej_roi_converter.pyhttp://www.github.com/MouseLand/cellpose/blob/main/imagej_roi_converter.py
model_quantization.ipynbhttp://www.github.com/MouseLand/cellpose/blob/main/model_quantization.ipynb
model_quantization.ipynbhttp://www.github.com/MouseLand/cellpose/blob/main/model_quantization.ipynb
setup.cfghttp://www.github.com/MouseLand/cellpose/blob/main/setup.cfg
setup.cfghttp://www.github.com/MouseLand/cellpose/blob/main/setup.cfg
setup.pyhttp://www.github.com/MouseLand/cellpose/blob/main/setup.py
setup.pyhttp://www.github.com/MouseLand/cellpose/blob/main/setup.py
tox.inihttp://www.github.com/MouseLand/cellpose/blob/main/tox.ini
tox.inihttp://www.github.com/MouseLand/cellpose/blob/main/tox.ini
READMEhttp://www.github.com/mouseland/cellpose
Contributinghttp://www.github.com/mouseland/cellpose
BSD-3-Clause licensehttp://www.github.com/mouseland/cellpose
http://www.github.com/mouseland/cellpose#--cellpose--
https://camo.githubusercontent.com/eded2b19d541a149b71e23cd40fa4ce2dfd6158146b04687361704a48e084e26/687474703a2f2f7777772e63656c6c706f73652e6f72672f7374617469632f696d616765732f6c6f676f2e706e673f7261773d54727565
https://cellpose.readthedocs.io/en/latest/?badge=latest
https://github.com/mouseland/cellpose/actions/workflows/test_and_deploy.yml/badge.svg
https://codecov.io/gh/MouseLand/cellpose
https://badge.fury.io/py/cellpose
https://pepy.tech/project/cellpose
https://pepy.tech/project/cellpose
https://pypistats.org/packages/cellpose
https://github.com/MouseLand/cellpose/blob/master/LICENSE
https://github.com/MouseLand/cellpose/graphs/contributors
https://www.cellpose.org
https://forum.image.sc/tag/cellpose
https://github.com/MouseLand/cellpose/
https://github.com/MouseLand/cellpose/
https://github.com/MouseLand/cellpose/
paperhttps://www.biorxiv.org/content/10.1101/2025.04.28.651001v1
talkhttps://www.youtube.com/watch?v=KIdYXgQemcI
tutorial talkhttps://youtu.be/5qANHWoubZU
videohttps://youtu.be/3Y1VKcxjNy4
issuehttps://github.com/MouseLand/cellpose/issues
belowhttp://www.github.com/MouseLand/cellpose/blob/main/README.md/#Installation
cellpose.readthedocs.iohttps://cellpose.readthedocs.io/en/latest/
websitehttps://huggingface.co/spaces/mouseland/cellpose
run_Cellpose-SAM.ipynbhttps://github.com/MouseLand/cellpose/blob/main/notebooks/run_Cellpose-SAM.ipynb
https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/run_Cellpose-SAM.ipynb
test_Cellpose-SAM.ipynbhttps://github.com/MouseLand/cellpose/blob/main/notebooks/test_Cellpose-SAM.ipynb
https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/test_Cellpose-SAM.ipynb
train_Cellpose-SAM.ipynbhttps://github.com/MouseLand/cellpose/blob/main/notebooks/train_Cellpose-SAM.ipynb
https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/train_Cellpose-SAM.ipynb
http://www.github.com/mouseland/cellpose#star2-v42-update-june-2026-star2
DINOv3https://github.com/facebookresearch/dinov3
herehttps://cellpose.readthedocs.io/en/latest/models.html
http://www.github.com/mouseland/cellpose#citation
paperhttps://www.biorxiv.org/content/10.1101/2025.04.28.651001v1
paperhttps://t.co/kBMXmPp3Yn?amp=1
paperhttps://www.nature.com/articles/s41592-022-01663-4
paperhttps://www.nature.com/articles/s41592-025-02595-5
http://www.github.com/mouseland/cellpose#old-updates
http://www.github.com/mouseland/cellpose#v31-update-feb-2025
@GFleishmanhttps://github.com/GFleishman
herehttps://cellpose.readthedocs.io/en/latest/distributed.html
herehttps://cellpose.readthedocs.io/en/latest/do3d.html#segmentation-settings
benchmarkshttps://cellpose.readthedocs.io/en/latest/benchmark.html
http://www.github.com/mouseland/cellpose#star2-v3-feb-2024-star2
paperhttps://www.nature.com/articles/s41592-025-02595-5
talkhttps://youtu.be/TZZZlGk6AKo
herehttps://cellpose.readthedocs.io/en/latest/restore.html
http://www.github.com/mouseland/cellpose#star2-v20-april-2022-star2
threadhttps://twitter.com/marius10p/status/1511415409047650307?s=20&t=umTVIG1CFKIWHYMrQqFKyQ
paperhttps://www.nature.com/articles/s41592-022-01663-4
reviewhttps://www.nature.com/articles/s41592-022-01664-3
short talkhttps://youtu.be/wB7XYh4QRiI
tutorial talkhttps://youtu.be/5qANHWoubZU
videohttps://youtu.be/3Y1VKcxjNy4
docshttps://cellpose.readthedocs.io/en/latest/gui.html#training-your-own-cellpose-model
http://www.github.com/mouseland/cellpose#installation
http://www.github.com/mouseland/cellpose#local-installation--2-minutes
http://www.github.com/mouseland/cellpose#system-requirements
http://www.github.com/mouseland/cellpose#dependencies
pytorchhttps://pytorch.org/
pyqtgraphhttp://pyqtgraph.org/
PyQt6https://www.riverbankcomputing.com/software/pyqt/
numpyhttp://www.numpy.org/
scipyhttps://www.scipy.org/
natsorthttps://natsort.readthedocs.io/en/master/
tifffilehttps://github.com/cgohlke/tifffile
imagecodecshttps://github.com/cgohlke/imagecodecs
roifilehttps://github.com/cgohlke/roifile
fastremaphttps://github.com/seung-lab/fastremap/
fill_voidshttps://github.com/seung-lab/fill_voids/
http://www.github.com/mouseland/cellpose#option-1-installation-instructions-with-conda
miniforgehttps://github.com/conda-forge/miniforge
herehttps://pypi.org/project/cellpose/
docshttps://cellpose.readthedocs.io/en/latest/installation.html
http://www.github.com/mouseland/cellpose#option-2-installation-instructions-with-pythons-venv
tutorialhttps://docs.python-guide.org/dev/virtualenvs/#lower-level-virtualenv
python.orghttps://www.python.org/downloads/
http://www.github.com/mouseland/cellpose#gpu-version-cuda-on-windows-or-linux
websitehttps://www.nvidia.com/Download/index.aspx?lang=en-us
herehttps://developer.nvidia.com/cuda-toolkit-archive
herehttps://pytorch.org/get-started/locally/
herehttps://pytorch.org/get-started/previous-versions/
http://www.github.com/mouseland/cellpose#installation-of-github-version
http://www.github.com/mouseland/cellpose#run-cellpose-10-without-local-python-installation
websitehttps://www.cellpose.org
Windows 10http://www.cellpose.org/windows
Mac OShttp://www.cellpose.org/mac
Mac OShttps://www.cellpose.org/mac
Windows 10https://www.cellpose.org/windows
http://www.github.com/mouseland/cellpose#run-cellpose-locally
websitehttps://www.cellpose.org
zip filehttps://www.cellpose.org/static/images/demo_images.zip
http://www.github.com/mouseland/cellpose#step-by-step-demo
zip filehttps://www.cellpose.org/static/images/demo_images.zip
herehttps://cellpose.readthedocs.io/en/latest/gui.html
http://www.github.com/mouseland/cellpose#3d-segmentation
http://www.github.com/mouseland/cellpose#contributions
http://www.github.com/mouseland/cellpose#download-of-pretrained-models
huggingfacehttps://huggingface.co/mouseland/cellpose-sam/tree/main
websitehttps://www.cellpose.org
google drive zip filehttps://drive.google.com/file/d/1zHGFYCqRCTwTPwgEUMNZu0EhQy2zaovg/view?usp=sharing
https://pan.baidu.com/s/1CARpRGCBHIYaz7KeyoX-fghttps://pan.baidu.com/s/1CARpRGCBHIYaz7KeyoX-fg
huggingface.co/spaces/mouseland/cellposehttps://huggingface.co/spaces/mouseland/cellpose
cell-biologyhttp://www.github.com/topics/cell-biology
cell-segmentationhttp://www.github.com/topics/cell-segmentation
segmentationhttp://www.github.com/topics/segmentation
Readmehttp://www.github.com/mouseland/cellpose#readme-ov-file
BSD-3-Clause licensehttp://www.github.com/mouseland/cellpose#BSD-3-Clause-1-ov-file
Contributinghttp://www.github.com/mouseland/cellpose#contributing-ov-file
Activityhttp://www.github.com/MouseLand/cellpose/activity
Custom propertieshttp://www.github.com/MouseLand/cellpose/custom-properties
2.3k starshttp://www.github.com/MouseLand/cellpose/stargazers
33 watchinghttp://www.github.com/MouseLand/cellpose/watchers
641 forkshttp://www.github.com/MouseLand/cellpose/forks
Report repositoryhttp://www.github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FMouseLand%2Fcellpose&report=MouseLand+%28user%29
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.