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Title: MBITE Tutorials

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Domain: melbournebioinformatics.github.io

Links:

http://melbournebioinformatics.github.io/
melbournebioinformatics/melbournebioinformatics.github.io https://github.com/melbournebioinformatics/melbournebioinformatics.github.io
http://melbournebioinformatics.github.io/
melbournebioinformatics/melbournebioinformatics.github.io https://github.com/melbournebioinformatics/melbournebioinformatics.github.io
Home http://melbournebioinformatics.github.io/tutorials/
Git for Researchers https://melbournebioinformatics.github.io/intro-to-git/
Intro to the Nectar Cloud https://melbournebioinformatics.github.io/nectar-instances/
Intro to R for Biologists https://melbournebioinformatics.github.io/intro-to-r/
Intro to Proteomics https://melbournebioinformatics.github.io/intro-to-proteomics/
RNA-seq: counts to genes https://melbournebioinformatics.github.io/rna-seq-counts-to-genes/
RNA-seq pathway analysis https://melbournebioinformatics.github.io/rna-pathways/
Differential expression with Seurat https://melbournebioinformatics.github.io/seurat-de-2025
What is Bioinformatics? http://melbournebioinformatics.github.io/guides/bioinfo/
Introduction to the Galaxy Platform http://melbournebioinformatics.github.io/guides/galaxy/
Introduction to Galaxy Workflows http://melbournebioinformatics.github.io/tutorials/galaxy-workflows/galaxy-workflows/
Introduction to Python http://melbournebioinformatics.github.io/tutorials/python_overview/python_overview/
Introduction to Unix http://melbournebioinformatics.github.io/tutorials/unix/unix/
Introduction to R for Biologists http://melbournebioinformatics.github.io/tutorials/intro_R_biologists/
Introduction to Genome Browsers http://melbournebioinformatics.github.io/tutorials/Genome_browsers/GenomeBrowsers_Intro/
Introduction to CWL http://melbournebioinformatics.github.io/tutorials/cwl_2022/cwl_2022/
RNA-seq Experimental Design https://melbournebioinformatics.github.io/intro-to-rna-seq/
Containerized Bioinformatics http://melbournebioinformatics.github.io/tutorials/docker/docker/
Command-line software development http://melbournebioinformatics.github.io/tutorials/bionitio/bionitio/
Version Control with Git http://melbournebioinformatics.github.io/tutorials/git/git/
Workflow Translation With Janis http://melbournebioinformatics.github.io/tutorials/janis_translate/janis_translate/
Introduction to Variant detection http://melbournebioinformatics.github.io/tutorials/var_detect_advanced/var_detect_advanced_background/
Variant Calling part 1 (Galaxy) http://melbournebioinformatics.github.io/tutorials/variant_calling_galaxy_1/variant_calling_galaxy_1/
Variant Calling part 2 (Galaxy) http://melbournebioinformatics.github.io/tutorials/var_detect_advanced/var_detect_advanced/
Long-read Structural Variant Calling http://melbournebioinformatics.github.io/tutorials/longread_sv_calling/longread_sv_calling/
Variant calling using command-line tools http://melbournebioinformatics.github.io/tutorials/variant_calling_gatk1/variant_calling_gatk1/
Introduction to de novo assembly with Velvet http://melbournebioinformatics.github.io/tutorials/assembly/assembly-background/
Introduction to de novo genome assembly for Illumina reads http://melbournebioinformatics.github.io/tutorials/assembly/assembly-protocol/
de novo assembly of Illumina reads using Velvet (Galaxy) http://melbournebioinformatics.github.io/tutorials/assembly/assembly/
de novo assembly of Illumina reads using Spades (Galaxy) http://melbournebioinformatics.github.io/tutorials/assembly/spades/
de novo assembly of PacBio reads (unix) http://melbournebioinformatics.github.io/tutorials/pacbio/
Hybrid genome assembly - Nanopore and Illumina http://melbournebioinformatics.github.io/tutorials/hybrid_assembly/nanopore_assembly/
Intro to Metabarcoding using QIIME2: *Marine dataset* http://melbournebioinformatics.github.io/tutorials/qiime2/qiime2/
Intro to Metabarcoding using QIIME2: *Mammal dataset* http://melbournebioinformatics.github.io/tutorials/qiime2_mammal/qiime2_mammal/
RNAseq Experimental Design https://melbournebioinformatics.github.io/intro-to-rna-seq/
RNA-seq: counts to genes http://melbournebioinformatics.github.io/tutorials/rna-seq-lcg/
Introduction to bulk RNAseq analysis http://melbournebioinformatics.github.io/tutorials/rna_seq_dge_basic/rna_seq_basic_background/
RNAseq analysis using HISAT2 (Galaxy) http://melbournebioinformatics.github.io/tutorials/rna_seq_dge_basic/rna_seq_basic_tutorial/
RNAseq analysis using Tuxedo (Galaxy) http://melbournebioinformatics.github.io/tutorials/rna_seq_dge_basic/rna_seq_basic_tuxedo/
RNAseq differential expression tool comparision (Galaxy) http://melbournebioinformatics.github.io/tutorials/rna_seq_dge_advanced/rna_seq_advanced_tutorial/
RNAseq differential expression in R http://melbournebioinformatics.github.io/tutorials/rna_seq_dge_in_r/rna_seq_r/
10X scRNA-seq analysis in R http://melbournebioinformatics.github.io/tutorials/singlecell/
scRNA-seq Integration and Differential Expression http://melbournebioinformatics.github.io/tutorials/seurat-de/seurat-de/
Gene Ontology (GO) and Data Integration for scRNA-seq http://melbournebioinformatics.github.io/tutorials/seurat-go/seurat-go/
Identifying proteins from mass spectrometry data http://melbournebioinformatics.github.io/tutorials/proteomics_basic/proteomics_basic/
Data visualisation with Python http://melbournebioinformatics.github.io/tutorials/python_viz/python_viz/
Molecular Dynamics - Introduction to cluster computing http://melbournebioinformatics.github.io/tutorials/molecular_dynamics_101/molecular_dynamics_101/
Molecular Dynamics - Building input files, visualising the trajectory http://melbournebioinformatics.github.io/tutorials/molecular_dynamics_201/molecular_dynamics_201/
Workshops on Nectar Instances http://melbournebioinformatics.github.io/tutorials/workshop_delivery_mode_info/workshops_nectar/
Introduction to Unix-Archive http://melbournebioinformatics.github.io/tutorials/unix_archive_2022/unix/
Introduction to CWL http://melbournebioinformatics.github.io/tutorials/cwl/cwl/
Introduction to Git and Github (deprecated) http://melbournebioinformatics.github.io/tutorials/using_git/Using_Git/
RNA-seq Experimental Design (deprecated) http://melbournebioinformatics.github.io/tutorials/rna_seq_exp_design/rna_seq_experimental_design/
Melbourne Bioinformatics – The University of Melbourne ©https://www.melbournebioinformatics.org.au/
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